Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1154 ATGGGAATCGCAAAAGGTCCATTAATTTTGTCCAATAAGCCAACAACAAATTGTGCCAATTCTTCTATGTCCCACGATTATCATCAAGGAATCTTCTCCAGTTTCTCTAATGCCTTGGACAAATCACCCGCCCATCTCTCCGCCCACCTCCCGCCCCAGATCCGCCGCGACAAGCTCAGACCCGACGCCTTTGCCGACGATGACGCTCTCGCGCCTGTCGCGGACGACATAGATCAACAACACCACCAACAATTTCATCATGTCTACGCCGCACCCGGCGGGGCCATGTTGTCAGAAATGTTCAATTTCCCTCCGCCTCCCACTGCCGTCGAATTCTCCAACAGTTTTCGGACGTTGAGACCGCAACCTCCGCCGCCACCGCCGCCTAATTCGGCTGCGGCTGCGGCTGCCATGCAGCTTTTTTTAATGAACCCTCCGCCGCCGCCACCTCGATCGCCGTCTCCTCCTTCCACCTCCTCCACCCTCCATATGCTCCTCCCAAATCCACCCACCCCTCTTCACGGTTTCGACGGCGAGGCCGCTTTCGGGCAATTCGCCGTCGTCGAAAGTCAAGGGCTTTCACTCTCACTTCACTCGTCTTCCTCCTTGGACGCCGCCAAAGCTGATGAATTGCGTATTAGAGACAGCGGATTTCTGTATAATTATAATCAAGTCCACGGCGGCGGCGGCGGAAGTGGGTCGGCCGGGACATCCTCAATTTTGCAATATTCTTATAGAAATTCGGAGAATTCCCACGGCGGCCAGATTAATCACGTTGGATTTGGGTCGTCTTTGGGCGTGGTAAACGTATTGAGGAACTCCAAATTTGCGAAACCCGCACAAGAATTGCTTGAAGAATTCTGTAGCGTTGGAAGGGTTCAGTTGAAGAAGAGCAAATTCGGCAGTGCAAAGCAAAACCCTGACCCTGAAACTGCCGCCACCGGCGCCTCTTCATCGTCGAAGGACCAACCTCCCCCCTTATCAGCTGCTGACAGAATTGAGCATCAACGGAGGAAGGTCAAACTATTGTCCATGCTTGATGAGGTTGAGCGGAGATACAACCTATACCGGGAGCAAATGGCGATGGTGGTGAACTCGTTCGACGTGGTGATGGGGACGGGGGCAGCGGGGCCATACACGACGCTGACGCAGAAGGCGATGTCGCGGCACTTCCGATGCCTGAAGGAGGCCATAGCGGGGCAACTGAGGCAGAGCTACGAGGCGCTTGGGGAGAAGGGCGGGAGCGGGGGGCCCGGGATTACCAAGGGGGAGACGCCGCGCCTCAAGATCCTGGAGCAGACTCTCCGCCAGCAGAGGGCCTTCCACCAGATGGGGATGATGGAGCAGGAGGCCTGGAGGCCGCAGCGTGGCCTCCCCGAACGATCCGTCAACATTTTAAGGGCTTGGCTCTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTTTCGAATTGGTTCATTAATGCGAGAGTTCGGCTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGCAAAGTAGAAGCAGATTCAGAAGACGATAGTACTACACAACCTAATAAAATCAATAACAACAAAACCCAAAACACTGCACAAAATCCAACGCCCACCACCGCCGCCACCGGCGCTCCACCACCACCGTCAACCGCCGACCAAGGCACGGCGGCGACGGAGATGTACTCGGAGCTGCACGATATGTGGCGCCATGGAAGCATGGTGGCAGAAAATTATGGGACCATCACTGGAGATCATGTAGCAGCAGCAGCGGCTGACATGAATGGGCCAACACTTATAAGGTTCGGGACCAGCGGTACGGCGTCTGGAGACGTGTCCCTCACTTTAGGGCTCCGCCACGCCGGAAACGCGCCGGCCGATAACCCGCCTTTCTCCGTCAGGAACTTTGGACACTCTTGA 1965 55.32 MGIAKGPLILSNKPTTNCANSSMSHDYHQGIFSSFSNALDKSPAHLSAHLPPQIRRDKLRPDAFADDDALAPVADDIDQQHHQQFHHVYAAPGGAMLSEMFNFPPPPTAVEFSNSFRTLRPQPPPPPPPNSAAAAAAMQLFLMNPPPPPPRSPSPPSTSSTLHMLLPNPPTPLHGFDGEAAFGQFAVVESQGLSLSLHSSSSLDAAKADELRIRDSGFLYNYNQVHGGGGGSGSAGTSSILQYSYRNSENSHGGQINHVGFGSSLGVVNVLRNSKFAKPAQELLEEFCSVGRVQLKKSKFGSAKQNPDPETAATGASSSSKDQPPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMAMVVNSFDVVMGTGAAGPYTTLTQKAMSRHFRCLKEAIAGQLRQSYEALGEKGGSGGPGITKGETPRLKILEQTLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVEADSEDDSTTQPNKINNNKTQNTAQNPTPTTAATGAPPPPSTADQGTAATEMYSELHDMWRHGSMVAENYGTITGDHVAAAAADMNGPTLIRFGTSGTASGDVSLTLGLRHAGNAPADNPPFSVRNFGHS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14015144 14019746 + MC01g0812 Mch1g1154 676046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1154 654 MobiDBLite consensus disorder prediction 299 334 - -
Mch1g1154 654 MobiDBLite consensus disorder prediction 533 571 - -
Mch1g1154 654 MobiDBLite consensus disorder prediction 524 571 - -
Mch1g1154 654 MobiDBLite consensus disorder prediction 113 132 - -
Mch1g1154 654 FunFam BEL1-like homeodomain protein 4 455 517 - -
Mch1g1154 654 MobiDBLite consensus disorder prediction 142 156 - -
Mch1g1154 654 Gene3D - 455 517 - -
Mch1g1154 654 Pfam Associated with HOX 270 399 IPR006563 -
Mch1g1154 654 CDD homeodomain 452 513 IPR001356 GO:0003677(InterPro)
Mch1g1154 654 SMART HOX_1 452 516 IPR001356 GO:0003677(InterPro)
Mch1g1154 654 MobiDBLite consensus disorder prediction 299 325 - -
Mch1g1154 654 MobiDBLite consensus disorder prediction 141 164 - -
Mch1g1154 654 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 198 545 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch1g1154 654 ProSiteProfiles 'Homeobox' domain profile. 449 512 IPR001356 GO:0003677(InterPro)
Mch1g1154 654 Pfam Homeobox KN domain 469 508 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch1g1154 654 SMART prehox3 265 400 IPR006563 -
Mch1g1154 654 SUPERFAMILY Homeodomain-like 453 520 IPR009057 -
Mch1g1154 654 Coils Coil 339 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1154 Mch-Chr1:14015144 Mch2g1383 Mch-Chr2:9999709 6.95E-142 dispersed
Mch1g1154 Mch-Chr1:14015144 Mch5g1540 Mch-Chr5:16429301 2.87E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42715 PF07526 POX 7.00E-46 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1154 - - - 0.0