Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1196 ATGCGTTGGTTCCGTAACATCTCCTTTTCCCCCTCCTCCACGCTGAAGAGTCCCGGCTCTACCACCGCCGCCGATTCTGACGATCATAATTATCGGGGGGTCATTTGGCGTTTTGGCGCCTCCAAGTATTCCCGCCGTAAGAAGCTTCGTAATCTAAGCGGACGTGAGGGCCCTACTGCTTCTCTCGCTAAATGGTCCGATTCTGCCCCCTCCGAAGCGGCGACCTTGTCGCGATCGCCCAGTACCTCCGACCATGCCGTGCCCTTGCCGCTTCCGGAGACTTCTCCACTCTTTCAGCGTCGTGAAGGGAATTCCAATTCCAATTCCAATTCTGGAAGTGGAGACGTGGACTGCCCTCTTCCGTCTCCCAAGGATAGGCGTGGCAGAGGCGGGGAGGAGCGCGATGTAGATAGAGATAGAACTCCCCCTGCTCATAAAATTGGGGGCGGGGCCTTCACAAACGCTCCAATTAAAAGTGTATTTGATTCCCGGGAGAGGCAGAAGAAAGAAGATCATTGTGAGACAAGGTCATCTACGAGGGCAAATCAAGATTCGAGAAGATACCCTGAAAAATCTCGAAACAGTTTTAGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTTTGCAAGTCCTGCACTCAGTCCCCCAAGAAATGGTTCTGGAAACCTTTCAAATTTTCATTATGTGGCTCCAGCAGGAAATCAAGGATGGTCTGCTCCTGAACTGCCAAATTTTCATTATGGGCCTTCAGTAGGAAATCACGGCTGGTCTGCACCTGAGCTGCCATCGTCAGCAATGATGCGAGGAGTTCCTCCTGCATTCTTTGATGGCTGTGCTCTTAGCTCTGAGAGTTCTCCCATGCAGAGCCCAACAGGTAGAAGTCCCCACCAAGATGCCAGAAGTCCAACCGGACCTGCATCTCCATTGCACACCAAGCTATCCCTTGAAACACATGCTGCACGCCGTGAAAGTTCTGGTCATGTCAGTGTCCACCCTCTACCTCTTCCTCCTGGAGTACCAATGCCTTCACCATCAACCTCAATGCCTTTACCATCAACCTCTATACCGTCGCCATCAATCGCAATACCTTCCCCATCAATCGCAATATCTTTGCCATCAACCCCAATTACACAAGTGAGCACTAAAACTGAGTCAATCTCTATGAAAGATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGTACATTCGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAATTATTTCCTGACGATCCAAAATCGGCCGAATGCATAAAGCAGTTAGAACAGGAGATCAAAGTTCTCAGCCAGCTAAAGCATCCAAATATTGTCCAGTATTATGGTAGTGATATTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATTCTCTCAGGGTTGGCCTACTTGCATAGCACAAAGACTATACACCGGGACATCAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCCGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTGTCTGTGATGCAGAAAGATAACAGCTCTGATCTCGCCCTAGCTGTTGATATTTGGAGCCTAGGTTGCACTATTATAGAAATGTTCACCGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTCAAGGTCATGAGAGATACCCCATCAATACCTGAATCATTGTCATTTGAAGGCAGGGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGGCCAACTGCTGCCATGCTGCTCGAACATCCGTTTATGAAAAACTTGCAGCATCCAGATGGCCCATCTTGCTCTCAGGCCGTTGGAGCAAATTTGCTGGACAAATGCTACAGCCCGAGCAAACAATATTCAAGTAAATTTGATCAGTTTCCCATGTTTCCAAGCCCACAAAATTCCAAGGGAAAGATGGCTGCTGAGAGGCAAGAGCTGCTTTTTCCCTTTTTTGTGATTGGCCAACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGATATTCCCCCCGTTCTATCCTTGAGGCTCTTCCAATATCGTCTCCTCCACACCCAGTTCATAATGTGCATCATCATGGTTCCCCTGCGAATGTGTTCAACATTGTTAACCACAGCAGTGAGTTTCTGGCACGGGTTGTTACTTACCTGTGTAGGTTATTGCCTCCTTTTCAAATGAAAAGGCTTCTGGTCTGGAAGTGTACCCTGTACTGGGAGTTGAGAAACAATTTTGTATTCTGTTTTTTTTCTTTTTTCCCCCCATTTTTTAGAGCTTCAGTAATGGCGACATCTGATCATTCCTTGGTATTGGGGTGGGAAATCGCCACTTCCATGTACAACTTTAAGCTGAATTTG 2556 46.79 MRWFRNISFSPSSTLKSPGSTTAADSDDHNYRGVIWRFGASKYSRRKKLRNLSGREGPTASLAKWSDSAPSEAATLSRSPSTSDHAVPLPLPETSPLFQRREGNSNSNSNSGSGDVDCPLPSPKDRRGRGGEERDVDRDRTPPAHKIGGGAFTNAPIKSVFDSRERQKKEDHCETRSSTRANQDSRRYPEKSRNSFRIDVPSRSAPTSPFASPALSPPRNGSGNLSNFHYVAPAGNQGWSAPELPNFHYGPSVGNHGWSAPELPSSAMMRGVPPAFFDGCALSSESSPMQSPTGRSPHQDARSPTGPASPLHTKLSLETHAARRESSGHVSVHPLPLPPGVPMPSPSTSMPLPSTSIPSPSIAIPSPSIAISLPSTPITQVSTKTESISMKDQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFPDDPKSAECIKQLEQEIKVLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPSIPESLSFEGRDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDGPSCSQAVGANLLDKCYSPSKQYSSKFDQFPMFPSPQNSKGKMAAERQELLFPFFVIGQLSHHETSDLTVMSRYSPRSILEALPISSPPHPVHNVHHHGSPANVFNIVNHSSEFLARVVTYLCRLLPPFQMKRLLVWKCTLYWELRNNFVFCFFSFFPPFFRASVMATSDHSLVLGWEIATSMYNFKLNL 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14334790 14340886 + MC01g0852 Mch1g1196 676088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1196 852 MobiDBLite consensus disorder prediction 1 29 - -
Mch1g1196 852 MobiDBLite consensus disorder prediction 161 197 - -
Mch1g1196 852 MobiDBLite consensus disorder prediction 335 353 - -
Mch1g1196 852 MobiDBLite consensus disorder prediction 198 221 - -
Mch1g1196 852 ProSitePatterns Protein kinases ATP-binding region signature. 400 423 IPR017441 GO:0005524(InterPro)
Mch1g1196 852 SMART serkin_6 394 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1196 852 MobiDBLite consensus disorder prediction 120 144 - -
Mch1g1196 852 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 57 661 IPR050538 -
Mch1g1196 852 SUPERFAMILY Protein kinase-like (PK-like) 371 671 IPR011009 -
Mch1g1196 852 ProSiteProfiles Protein kinase domain profile. 394 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1196 852 MobiDBLite consensus disorder prediction 64 84 - -
Mch1g1196 852 MobiDBLite consensus disorder prediction 98 116 - -
Mch1g1196 852 Gene3D Transferase(Phosphotransferase) domain 1 390 690 - -
Mch1g1196 852 MobiDBLite consensus disorder prediction 283 303 - -
Mch1g1196 852 FunFam Mitogen-activated protein kinase kinase kinase 5 391 691 - -
Mch1g1196 852 Pfam Protein kinase domain 395 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1196 852 MobiDBLite consensus disorder prediction 51 221 - -
Mch1g1196 852 MobiDBLite consensus disorder prediction 279 355 - -
Mch1g1196 852 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1011 Mch-Chr1:13125884 Mch1g1196 Mch-Chr1:14334790 3.87E-102 dispersed
Mch1g1196 Mch-Chr1:14334790 Mch6g2443 Mch-Chr6:26371577 9.47E-106 dispersed
Mch1g1196 Mch-Chr1:14334790 Mch8g0724 Mch-Chr8:5136400 6.96E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77126 PF00069 Pkinase 7.70E-67 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1196 - - - 0.0