Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1217 ATGGACTGGGTTCGAGGACATGAAATTGGACATGGCAGTTTCGCCACCATCAATCTCGCGCTGCCTTCTAAAACTTCTGCTGCTCAATTTCCATCATTAATGGCGGTTAAATCATCTGGAGCTGTCTGCTCTTCCTCGCTTAAGAACGAGAAGCAAGTTTTGGATCTTCTCGGTGATTGCCCACAAATTGTTCGGTGTTTTGGCGAGAGCTGCACCCTCGAGAATGGCGAGCAGTTTTATAATTTGTTTCTGGAATATGCTAGCGGCGGGAGTTTAGCTGATAGGATACAGACCCGCGGTGGTCGCTTGCCTGAATTTGAGGTTAGGAGGTATACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAACCCGGGAATATTCTCGTGTTCGATGACGGGGATGTTAAAATTGCCGATTTCGGATTGTCGAAGAAAGCGGGAAAAAACAGAGCAGAAACAGAGCAAGAGAGGAAATTCCAGCTGAGAGGCTCTCCTCTGTACATGTCGCCGGAATCGGTGAGTCATAACGAGTACGAGTCACCTTGTGATATATGGGCCGTTGGATGCGGGGTGGTGGAGATGTTGACAGGAAAACCCGCCTGGAATTGCCGCCCGGAATCCAACATCTACTCTATATTGCTTCGAATTGGAATCGGAGAGGAGTTGCCGGAATTTCCTAAAGATCTCTCGGAGGAAGGGACGGATTTTCTCGGAAAATGCTTCATCAAGGATCCGACGAAGAGATGGACGGCCGAGATGCTTTTGAATCACCCATTCGTAGCAGACGCCGGAAAGTCTGCTCCACTGACGGCCATGGAGGAAGCATCGACATCGCCGAGGTGCCCTTTCGATTTCGAAGATTGGGCATCGGTTGAGTCGCAGGAGATGGATCAAAGATTTTGGTCGAATTCGTCGTTTTCGTCTTCCCCGACGGAGCGGCTGCTTCAGCTGGTGGACAACGAGGCAGTTGATTGGTCTGTCGCTGACAGTTGGGTCACCGTCAGA 1035 49.95 MDWVRGHEIGHGSFATINLALPSKTSAAQFPSLMAVKSSGAVCSSSLKNEKQVLDLLGDCPQIVRCFGESCTLENGEQFYNLFLEYASGGSLADRIQTRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPGNILVFDDGDVKIADFGLSKKAGKNRAETEQERKFQLRGSPLYMSPESVSHNEYESPCDIWAVGCGVVEMLTGKPAWNCRPESNIYSILLRIGIGEELPEFPKDLSEEGTDFLGKCFIKDPTKRWTAEMLLNHPFVADAGKSAPLTAMEEASTSPRCPFDFEDWASVESQEMDQRFWSNSSFSSSPTERLLQLVDNEAVDWSVADSWVTVR 345
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 14525626 14526660 + MC01g0871 Mch1g1217 676109
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1217 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 271 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch1g1217 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1217 345 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1217 345 SUPERFAMILY Protein kinase-like (PK-like) 3 321 IPR011009 -
Mch1g1217 345 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1217 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524(InterPro)
Mch1g1217 345 Gene3D Transferase(Phosphotransferase) domain 1 94 322 - -
Mch1g1217 345 SMART serkin_6 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1217 345 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Mch1g1217 345 CDD STKc_MAPKKK 2 270 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1217 Mch-Chr1:14525626 Mch2g1304 Mch-Chr2:9192605 2.27E-144 dispersed
Mch1g1217 Mch-Chr1:14525626 Mch9g0834 Mch-Chr9:6299304 3.65E-69 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77128 PF00069 Pkinase 5.70E-55 CL0016 Mch PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1217 - - - 0.0