Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g1217 | ATGGACTGGGTTCGAGGACATGAAATTGGACATGGCAGTTTCGCCACCATCAATCTCGCGCTGCCTTCTAAAACTTCTGCTGCTCAATTTCCATCATTAATGGCGGTTAAATCATCTGGAGCTGTCTGCTCTTCCTCGCTTAAGAACGAGAAGCAAGTTTTGGATCTTCTCGGTGATTGCCCACAAATTGTTCGGTGTTTTGGCGAGAGCTGCACCCTCGAGAATGGCGAGCAGTTTTATAATTTGTTTCTGGAATATGCTAGCGGCGGGAGTTTAGCTGATAGGATACAGACCCGCGGTGGTCGCTTGCCTGAATTTGAGGTTAGGAGGTATACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAACCCGGGAATATTCTCGTGTTCGATGACGGGGATGTTAAAATTGCCGATTTCGGATTGTCGAAGAAAGCGGGAAAAAACAGAGCAGAAACAGAGCAAGAGAGGAAATTCCAGCTGAGAGGCTCTCCTCTGTACATGTCGCCGGAATCGGTGAGTCATAACGAGTACGAGTCACCTTGTGATATATGGGCCGTTGGATGCGGGGTGGTGGAGATGTTGACAGGAAAACCCGCCTGGAATTGCCGCCCGGAATCCAACATCTACTCTATATTGCTTCGAATTGGAATCGGAGAGGAGTTGCCGGAATTTCCTAAAGATCTCTCGGAGGAAGGGACGGATTTTCTCGGAAAATGCTTCATCAAGGATCCGACGAAGAGATGGACGGCCGAGATGCTTTTGAATCACCCATTCGTAGCAGACGCCGGAAAGTCTGCTCCACTGACGGCCATGGAGGAAGCATCGACATCGCCGAGGTGCCCTTTCGATTTCGAAGATTGGGCATCGGTTGAGTCGCAGGAGATGGATCAAAGATTTTGGTCGAATTCGTCGTTTTCGTCTTCCCCGACGGAGCGGCTGCTTCAGCTGGTGGACAACGAGGCAGTTGATTGGTCTGTCGCTGACAGTTGGGTCACCGTCAGA | 1035 | 49.95 | MDWVRGHEIGHGSFATINLALPSKTSAAQFPSLMAVKSSGAVCSSSLKNEKQVLDLLGDCPQIVRCFGESCTLENGEQFYNLFLEYASGGSLADRIQTRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPGNILVFDDGDVKIADFGLSKKAGKNRAETEQERKFQLRGSPLYMSPESVSHNEYESPCDIWAVGCGVVEMLTGKPAWNCRPESNIYSILLRIGIGEELPEFPKDLSEEGTDFLGKCFIKDPTKRWTAEMLLNHPFVADAGKSAPLTAMEEASTSPRCPFDFEDWASVESQEMDQRFWSNSSFSSSPTERLLQLVDNEAVDWSVADSWVTVR | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14525626 | 14526660 | + | MC01g0871 | Mch1g1217 | 676109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g1217 | 345 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 271 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Mch1g1217 | 345 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 127 | 139 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch1g1217 | 345 | ProSiteProfiles | Protein kinase domain profile. | 3 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch1g1217 | 345 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 321 | IPR011009 | - | |
Mch1g1217 | 345 | Pfam | Protein kinase domain | 5 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch1g1217 | 345 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 37 | IPR017441 | GO:0005524(InterPro) | |
Mch1g1217 | 345 | Gene3D | Transferase(Phosphotransferase) domain 1 | 94 | 322 | - | - | |
Mch1g1217 | 345 | SMART | serkin_6 | 3 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch1g1217 | 345 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 93 | - | - | |
Mch1g1217 | 345 | CDD | STKc_MAPKKK | 2 | 270 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1217 | Mch-Chr1:14525626 | Mch2g1304 | Mch-Chr2:9192605 | 2.27E-144 | dispersed | |
Mch1g1217 | Mch-Chr1:14525626 | Mch9g0834 | Mch-Chr9:6299304 | 3.65E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77128 | PF00069 | Pkinase | 5.70E-55 | CL0016 | Mch | PK |
Pathway information
