Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1224 ATGTGGGATCTCAACGATTGTCCAGAGGAGAGGGGAGGCGATGAATCGGAAGCTGAAGCCGAAGCCGAAGCGTGTTGGTCCCCGAAGACGTCGGAGGAGAAGGGGAAAAGAGTGGGATGGGGGGGATCCGTTTCCAATTCCAGTTCCTCGGCGCTGCTTCTCGAGGAGGGATCCGATGAGGAGGAGCTATACGGGTCCATGGAAATTGACGACCCAAGCCCCGGCCCCGTCACTCGCCAGTTCTTTCCACTCCAGGACTCTACTGCTGCTCCGCCTCCTACAACTGCTTCCGCCTTCCCTCGGGCTCACTGGGTCGGGGTCAAATTCTGCCATCCCGATCCTCTCGCCGCCGCTAATTCCATCAAATCCACCACCGACCTTTCCCACCCCATTAAGAAGAGCCGCCGGGGACCCAGGTCTCGCAGCTCTCAGTTTCGCGGCGTCACTTTTTACCGCAGGACCGGCCGCTGGGAGTCCCATATTTGGGATTGTGGAAAGCAAGTTTATCTCGGTGGATTCGACACGGCACATGCAGCTGCACGTGCTTACGATAGAGCAGCAATTAAATTCCGAGGGGTTGAGGCGGACATAAACTTCAGCATCGAAGATTACGAGGAAGATTTAAAACAGATGGGAAATCTAACAAAGGAAGAATTTGTGCACGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGAAGCTCCAAGTATAGAGGTGTTACGCTTCACAAGTGTGGAAGATGGGAGGCCCGAATGGGCCAATTTCTTGGCAAAAAGTACGTCTATTTGGGTTTGTTTGATACCGAGATTGAAGCTGCAAGGGCATACGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCAGTCACCAATTTCGATCCCAGCATCTACGATAATGAACTCAATCCCACAGCTGATTCAATTGGCAATTTGACGGACCACAGTCTTGATTTGAGTTTGGGAAATTCAAGCTCAAAGCAAAACGACAGCCCAAATGCCGCCGTAGATCCGCACCATTCTTCTTCTGTTCCTCTATCGATGGAAGCCGAGTGGCAACGGAACCACCATCAAGTATTTAGGCCTCCTCAGCTGAATTTGTTGCAAGAATCAAGCGGAGGTGCAAGTAAAAATTACAATGCACAGAGAAGAAATAATAACAATACTAATAGGTACCTGGAGAGTGAAACAATGCATCTCCTGAGCCAGACTCACATTCAATCTCCAGCTTCATTTGAAATGCAAAGACACGGCCAATTCAGTGGAGATCAGCCCCACTCCCAGATATTGCTTCACAATCACAATCACAACCCCAGCCTCAATTCTTTGAATTATCAAATTCAGTTTTCGGGCAGCAGTAATCGCAATGGAGGCCGAATAGGAAGTGATCTATCATTGTCTTTAAGTGATAATAATCAACTTCTTCAATCGGGGCCATCTCAAGCTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCGCAGATTATTCCTTCCAAAAATTGGCTGCAGAAGAATGGATTTCACTGTCTTATGAGACCCTCCTGA 1545 49.19 MWDLNDCPEERGGDESEAEAEAEACWSPKTSEEKGKRVGWGGSVSNSSSSALLLEEGSDEEELYGSMEIDDPSPGPVTRQFFPLQDSTAAPPPTTASAFPRAHWVGVKFCHPDPLAAANSIKSTTDLSHPIKKSRRGPRSRSSQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPTADSIGNLTDHSLDLSLGNSSSKQNDSPNAAVDPHHSSSVPLSMEAEWQRNHHQVFRPPQLNLLQESSGGASKNYNAQRRNNNNTNRYLESETMHLLSQTHIQSPASFEMQRHGQFSGDQPHSQILLHNHNHNPSLNSLNYQIQFSGSSNRNGGRIGSDLSLSLSDNNQLLQSGPSQALATAAASSGFAPQIIPSKNWLQKNGFHCLMRPS 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14575967 14581209 - MC01g_new0348 Mch1g1224 676116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1224 514 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 PRINTS Ethylene responsive element binding protein signature 275 295 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 ProSiteProfiles AP2/ERF domain profile. 144 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 Pfam AP2 domain 235 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 Pfam AP2 domain 144 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 SMART rav1_2 236 299 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 SMART rav1_2 144 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 MobiDBLite consensus disorder prediction 318 343 - -
Mch1g1224 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 78 376 - -
Mch1g1224 514 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677(InterPro)
Mch1g1224 514 MobiDBLite consensus disorder prediction 121 144 - -
Mch1g1224 514 SUPERFAMILY DNA-binding domain 235 295 IPR016177 GO:0003677(InterPro)
Mch1g1224 514 CDD AP2 144 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 FunFam AP2-like ethylene-responsive transcription factor 235 295 - -
Mch1g1224 514 ProSiteProfiles AP2/ERF domain profile. 236 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 CDD AP2 235 295 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 Gene3D AP2/ERF domain 235 294 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 Gene3D AP2/ERF domain 143 202 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1224 514 MobiDBLite consensus disorder prediction 1 94 - -
Mch1g1224 514 MobiDBLite consensus disorder prediction 80 94 - -
Mch1g1224 514 FunFam AP2-like ethylene-responsive transcription factor 143 202 - -
Mch1g1224 514 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0783 Mch-Chr1:11506599 Mch1g1224 Mch-Chr1:14575967 1.12E-99 dispersed
Mch1g1224 Mch-Chr1:14575967 Mch2g1314 Mch-Chr2:9321250 3.98E-172 dispersed
Mch1g1224 Mch-Chr1:14575967 Mch2g0969 Mch-Chr2:6542028 3.67E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42731 PF00847 AP2 3.50E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1224 K09284 - csv:101214724 619.387