Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1225 ATGGAGGGCGGAGGAGGAGAGGGAGGGCGGGAGGGTACGAGGAAAAGAGGGGTGGATAATCAGAGGCCGTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAACCCAATAAACGTTCCAGGATTTGGCTCGGCTCTTACTCCTCTCCCGTCGCCGCGGCCAGGGCTTACGACACCGCCGTCTTCTACCTCAGAGGTCCCTCCGCCAGGCTTAATTTCCCTGAGCTATTAGCCGGGGAAGCCTGCGGAATTAGCGCCGGCGGCGGCGACATGTCGGCCGCTTCGATACGGAAGAAAGCCACCGAGGTGGGGGCTCGAGTGGATGCTCTCGAGAGTTCCTTAGGGCATCACCATCACCACCACCACAGTCTCAATCGGAGCCATGATCCACACGAATCGGCGTCTCCGCCAGAGCTCAAGAGTTGCAGCGGGTTTCTGGATCGGGTCGACTTGAACAAATTACCCGACCCGGAAGAGGAGGCGGATGGGGAGTTCGATTGGGAGAGACAGTGA 531 58.95 MEGGGGEGGREGTRKRGVDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEACGISAGGGDMSAASIRKKATEVGARVDALESSLGHHHHHHHSLNRSHDPHESASPPELKSCSGFLDRVDLNKLPDPEEEADGEFDWERQ 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14601933 14604650 - MC01g_new0349 Mch1g1225 676117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1225 176 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677(InterPro)
Mch1g1225 176 Pfam AP2 domain 24 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1225 176 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1225 176 MobiDBLite consensus disorder prediction 157 176 - -
Mch1g1225 176 MobiDBLite consensus disorder prediction 119 176 - -
Mch1g1225 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 17 168 - -
Mch1g1225 176 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1225 176 MobiDBLite consensus disorder prediction 1 22 - -
Mch1g1225 176 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1225 176 MobiDBLite consensus disorder prediction 7 22 - -
Mch1g1225 176 CDD AP2 24 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1225 176 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Mch1g1225 176 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1225 176 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1225 Mch-Chr1:14601933 Mch6g0997 Mch-Chr6:7012171 2.18E-24 dispersed
Mch2g1317 Mch-Chr2:9346823 Mch1g1225 Mch-Chr1:14601933 6.94E-35 transposed
Mch1g1225 Mch-Chr1:14601933 Mch11g0316 Mch-Chr11:1957501 6.03E-47 wgd
Mch1g1225 Mch-Chr1:14601933 Mch8g0669 Mch-Chr8:4757508 2.58E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42732 PF00847 AP2 2.40E-11 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1225 K09286 - csv:101214481 269.24