Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1228 ATGAGACCCAATCGCCCCGCTCCCACATTCCTCCTTCTCTTTTCGGCTCTCCTGTTCTCTCTCCCCGCCTCCTTTCAAATTCCGCCGCCGGCGCTTGTTCCCCCGGAGGATTTGCTGCTGCCGTCCGACGCCGTTTCTCTTCTCTCATTCAAGTCCAAAGCCGACCTCGACAACAGGCTTCTCTACACTCTCAATGAGCGGTTCGATTACTGTCAATGGCAGGGCGTGAAGTGCGTCCAGGGCCGCGTTGTTCGACTGGTTCTTCAATCGTTTGGTCTCCGAGGGATGTTGGCTCCCAATACTGTGTCTCAGCTCGACCAGCTCCGGATCCTCAGCCTACACAATAACCCGCTCCAGGGACCCATTCCTGATCTTTCCGGACTCTTCAATCTTAAATCTCTCTTCCTCGGCCGCAACTCCTTCGTCGGAGCTTTTCCGCCCTCCATTCTCACTCTTCACCGTCTTCAGACTCTCGATCTTTCCTATAATAACTTCACTGGTCCGCTCCCGGCGAGGCTCTCCTCGTTGGACCGCCTCATTACGCTCCGCCTCGAGTGGAATGGTTTCAATGGAAGCCTTCCGCCGTTGAATCAGTCGTTTCTCGAGGTCTTCAATGTCACGGGGAATAATCTGACCGGACTGATTCCGGTGACCCCCACTCTTTCGCGTTTCAACACGTCGTCGTTTTTCTGGAACCCAGATCTCTGTGGCGAGATCATCAACAAGGCCTGCCATTCACGTGCTCCATTCTTCGAAGCTTCCAATGCCACTCCTCCGTCTCTCCCTTCTGTCCAGAACACTGAATCGCAGGACGTGGTTCTCTCTCCGGTCTCTCACGACAAGCACAAGGAAACCGGAATGATTTTGGGGCTTTCCCTCGGCGCTGCAGTTTTAGTAGCAGGTCTGCTGTGTTTCTATGCAGCTGCCAGAACTCAAAGAAGACAAACCACGTCAAAGCCGGCAATGGCGCAGTTTGAAACCGAAATTGCTTATTCCACGACTTCCGCAATCACCGACCGAGTCGATGGGAAGGGCGAATTTCAAGCTAAAGTGAAAGAAATCGAAGAAATGCCAAAGGCTCAGAACCAGAAGAGTGGTAATCTTATATTTTGTGAAGGTGAGTCCGAGTTGTTCAGCTTAGAGCAGTTAATGAGGGCATCGGCGGAGCTGCTCGGTAGAGGTACAATGGGAACTACATACAAAGCCGTGCTCTGCAACCAGTTAATCGTAACTGTGAAGCGCCTCGACGCTACTAAGACCGCCGTGACTAGCAGCGAAGTTTTCGACCGGCATATGGAAGCAGTGGGTGCGCTTCGTCACCCTAATTTGGTACCAGTTAGGGCCTACTTTCAAGCCAGGGGAGAGAGATTAGTGGTCTACGATTACCAACCTAACGGCAGTCTTTTCAATCTCATTCACGGTTCGAGATCAGCGAGGGCTAAGCCTCTGCACTGGACATCATGCTTGAAGATTGCAGAAGATTTAGCTCAGGGCATTGCTTATATACATCAAGCTTCTAAGTTAATCCATGGCAACTTGAAGTCTACTAACGTTCTTCTTGGAGCAGACTTTGAGGCCTGTCTAACAGATTATGGCCTCTCTGTTCTGGCAGACTCTTCTGAAGATCCAGATTCTTCAAGCTACCAAGCCCCCGAAACTCGCAAGTCCAGCCGCAATTCCACACACAAGAGTGATGTCTACACCTTTGGCGTCCTCTTGTTGGAGCTTTTGACAGGAAAACATCCTTCACACCATCCATTCCTCGAGCCAACTGATATGCCAGACTGGGTAAGAGCAGTTAGGGAAGACGATGGTGCTGATAGTAACCAGCTTGGAATGCTTACTGAGGTGGCTAGCATCTGTAGTACGACGTCCCCTGAACAGAGGCCAGCCATGTGGCAAGTTTTGAAAATGATACTGGAGATCAAAGAGAGTGTCATGATAGAGGACAGTGAATCTAGTGGCTTTTAA 1971 50.89 MRPNRPAPTFLLLFSALLFSLPASFQIPPPALVPPEDLLLPSDAVSLLSFKSKADLDNRLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGMLAPNTVSQLDQLRILSLHNNPLQGPIPDLSGLFNLKSLFLGRNSFVGAFPPSILTLHRLQTLDLSYNNFTGPLPARLSSLDRLITLRLEWNGFNGSLPPLNQSFLEVFNVTGNNLTGLIPVTPTLSRFNTSSFFWNPDLCGEIINKACHSRAPFFEASNATPPSLPSVQNTESQDVVLSPVSHDKHKETGMILGLSLGAAVLVAGLLCFYAAARTQRRQTTSKPAMAQFETEIAYSTTSAITDRVDGKGEFQAKVKEIEEMPKAQNQKSGNLIFCEGESELFSLEQLMRASAELLGRGTMGTTYKAVLCNQLIVTVKRLDATKTAVTSSEVFDRHMEAVGALRHPNLVPVRAYFQARGERLVVYDYQPNGSLFNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASKLIHGNLKSTNVLLGADFEACLTDYGLSVLADSSEDPDSSSYQAPETRKSSRNSTHKSDVYTFGVLLLELLTGKHPSHHPFLEPTDMPDWVRAVREDDGADSNQLGMLTEVASICSTTSPEQRPAMWQVLKMILEIKESVMIEDSESSGF 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14622470 14626398 - MC01g_new0351 Mch1g1228 676120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1228 656 ProSiteProfiles Protein kinase domain profile. 385 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1228 656 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Mch1g1228 656 Pfam Leucine Rich Repeat 107 124 IPR001611 GO:0005515(InterPro)
Mch1g1228 656 Gene3D Ribonuclease Inhibitor 41 197 IPR032675 -
Mch1g1228 656 Gene3D Phosphorylase Kinase; domain 1 348 462 - -
Mch1g1228 656 MobiDBLite consensus disorder prediction 539 555 - -
Mch1g1228 656 FunFam Probable inactive receptor kinase At5g67200 42 152 - -
Mch1g1228 656 MobiDBLite consensus disorder prediction 538 561 - -
Mch1g1228 656 Gene3D Transferase(Phosphotransferase) domain 1 464 654 - -
Mch1g1228 656 SUPERFAMILY L domain-like 42 237 - -
Mch1g1228 656 Pfam Protein tyrosine and serine/threonine kinase 389 637 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1228 656 Gene3D Ribonuclease Inhibitor 198 247 IPR032675 -
Mch1g1228 656 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 42 644 IPR046959 -
Mch1g1228 656 FunFam Leucine-rich repeat receptor-like protein kinase 154 246 - -
Mch1g1228 656 SUPERFAMILY Protein kinase-like (PK-like) 389 643 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1228 Mch-Chr1:14622470 Mch8g3115 Mch-Chr8:33507000 1.27E-70 dispersed
Mch9g1237 Mch-Chr9:13889507 Mch1g1228 Mch-Chr1:14622470 9.77E-131 transposed
Mch1g1228 Mch-Chr1:14622470 Mch2g0784 Mch-Chr2:5394060 3.67E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77129 PF00069 Pkinase 1.20E-30 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1228 - - - 0.0