Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g1230 | ATGGCCGTCCAGCTCATGAACACGCAGCCGCAGCCTCAACCCCAGCCCCACTACTGTGTCTCCACTTCCACTTCCACTGCCCGGAAAATGGAAGCCCACGCAGTCCAAGAAGCCGCCTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGCCTGCTCTCCAACGCCCACCAACACAACTCCTCCTTACCCAATTCCAACTCCAATTCTACCCTCGATATCCCCACCCACATCGACAACGACTGCCGCGCCGCCGCCGATGCCGCCGTCTCCAAGTTCAAGAAAGTCATCTCTCTTCTCGCCCGCAATCGCCTCGGTCACGCACGCTTCAGAAGAGCGCCTCTCCCTCAAGTCCGCTACGTGACCCCGATCCAGCAGATCCCGCCCCACCACCCCCGCGCCGCCGCCGATGTCGATAACAAGGACGACCCTTTCACTACCACTCTTAATTTCTCCTATTCATCGCCCCGTGGCTCCTTCATCTCCTCGTTGACCGCCGACGCCGAAGCCGACACCAAGCTTCAGCCCTCCTCCTCCTCCTCCGCCTTCCAGATCACTAACCTCTCCCAGGTCTCCTCCGCCGGAAAACCCCCCCTCTCTACTTCTTCGCTCAAGAGGAAGTGCAGCTCCGATAACTTGGGATCCGGCAAGTGCGGTGGCTCTTCCGCCGGCCGATGCCACTGTTCGAAGAAAAGAAAACTGAGGTTGAAGAGGGTGGTTAGAGTTCCGGCGATAAGCTTGAAAATGGCGGACATCCCACCGGACGATTATTCGTGGAGAAAATATGGTCAAAAGCCGATTAAAGGGTCTCCACATCCGAGAGGTTATTACAAGTGTAGCAGCGTGAGAGGGTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCGATGCTAGTGGTGACCTACGAAGGAGAACACAATCACACTCTGTCTGCGCCCGAAACCGCTAATCTCATCCTAGAGTCCTCCTAG | 978 | 57.87 | MAVQLMNTQPQPQPQPHYCVSTSTSTARKMEAHAVQEAASGLESVEKLIRLLSNAHQHNSSLPNSNSNSTLDIPTHIDNDCRAAADAAVSKFKKVISLLARNRLGHARFRRAPLPQVRYVTPIQQIPPHHPRAAADVDNKDDPFTTTLNFSYSSPRGSFISSLTADAEADTKLQPSSSSSAFQITNLSQVSSAGKPPLSTSSLKRKCSSDNLGSGKCGGSSAGRCHCSKKRKLRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLSAPETANLILESS | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14640885 | 14642838 | - | MC01g0879 | Mch1g1230 | 676122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g1230 | 325 | Pfam | WRKY DNA -binding domain | 254 | 310 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1230 | 325 | Gene3D | WRKY domain | 240 | 313 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1230 | 325 | MobiDBLite | consensus disorder prediction | 191 | 225 | - | - | |
Mch1g1230 | 325 | SUPERFAMILY | WRKY DNA-binding domain | 249 | 312 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1230 | 325 | ProSiteProfiles | WRKY domain profile. | 247 | 313 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1230 | 325 | MobiDBLite | consensus disorder prediction | 191 | 216 | - | - | |
Mch1g1230 | 325 | Pfam | Plant zinc cluster domain | 204 | 250 | IPR018872 | - | |
Mch1g1230 | 325 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 35 | 314 | IPR044810 | GO:0003700(InterPro) | |
Mch1g1230 | 325 | SMART | WRKY_cls | 252 | 312 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch1g1230 | 325 | FunFam | WRKY transcription factor 65 | 236 | 313 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1230 | Mch-Chr1:14640885 | Mch6g0480 | Mch-Chr6:3169097 | 2.47E-61 | dispersed | |
Mch1g1230 | Mch-Chr1:14640885 | Mch11g0325 | Mch-Chr11:2005560 | 6.49E-97 | wgd | |
Mch1g1230 | Mch-Chr1:14640885 | Mch2g1266 | Mch-Chr2:8784493 | 1.10E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42733 | PF03106 | WRKY | 4.30E-26 | CL0274 | Mch | TF |
Pathway information
