Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1230 ATGGCCGTCCAGCTCATGAACACGCAGCCGCAGCCTCAACCCCAGCCCCACTACTGTGTCTCCACTTCCACTTCCACTGCCCGGAAAATGGAAGCCCACGCAGTCCAAGAAGCCGCCTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGCCTGCTCTCCAACGCCCACCAACACAACTCCTCCTTACCCAATTCCAACTCCAATTCTACCCTCGATATCCCCACCCACATCGACAACGACTGCCGCGCCGCCGCCGATGCCGCCGTCTCCAAGTTCAAGAAAGTCATCTCTCTTCTCGCCCGCAATCGCCTCGGTCACGCACGCTTCAGAAGAGCGCCTCTCCCTCAAGTCCGCTACGTGACCCCGATCCAGCAGATCCCGCCCCACCACCCCCGCGCCGCCGCCGATGTCGATAACAAGGACGACCCTTTCACTACCACTCTTAATTTCTCCTATTCATCGCCCCGTGGCTCCTTCATCTCCTCGTTGACCGCCGACGCCGAAGCCGACACCAAGCTTCAGCCCTCCTCCTCCTCCTCCGCCTTCCAGATCACTAACCTCTCCCAGGTCTCCTCCGCCGGAAAACCCCCCCTCTCTACTTCTTCGCTCAAGAGGAAGTGCAGCTCCGATAACTTGGGATCCGGCAAGTGCGGTGGCTCTTCCGCCGGCCGATGCCACTGTTCGAAGAAAAGAAAACTGAGGTTGAAGAGGGTGGTTAGAGTTCCGGCGATAAGCTTGAAAATGGCGGACATCCCACCGGACGATTATTCGTGGAGAAAATATGGTCAAAAGCCGATTAAAGGGTCTCCACATCCGAGAGGTTATTACAAGTGTAGCAGCGTGAGAGGGTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCGATGCTAGTGGTGACCTACGAAGGAGAACACAATCACACTCTGTCTGCGCCCGAAACCGCTAATCTCATCCTAGAGTCCTCCTAG 978 57.87 MAVQLMNTQPQPQPQPHYCVSTSTSTARKMEAHAVQEAASGLESVEKLIRLLSNAHQHNSSLPNSNSNSTLDIPTHIDNDCRAAADAAVSKFKKVISLLARNRLGHARFRRAPLPQVRYVTPIQQIPPHHPRAAADVDNKDDPFTTTLNFSYSSPRGSFISSLTADAEADTKLQPSSSSSAFQITNLSQVSSAGKPPLSTSSLKRKCSSDNLGSGKCGGSSAGRCHCSKKRKLRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLSAPETANLILESS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14640885 14642838 - MC01g0879 Mch1g1230 676122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1230 325 Pfam WRKY DNA -binding domain 254 310 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1230 325 Gene3D WRKY domain 240 313 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1230 325 MobiDBLite consensus disorder prediction 191 225 - -
Mch1g1230 325 SUPERFAMILY WRKY DNA-binding domain 249 312 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1230 325 ProSiteProfiles WRKY domain profile. 247 313 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1230 325 MobiDBLite consensus disorder prediction 191 216 - -
Mch1g1230 325 Pfam Plant zinc cluster domain 204 250 IPR018872 -
Mch1g1230 325 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 314 IPR044810 GO:0003700(InterPro)
Mch1g1230 325 SMART WRKY_cls 252 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1230 325 FunFam WRKY transcription factor 65 236 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1230 Mch-Chr1:14640885 Mch6g0480 Mch-Chr6:3169097 2.47E-61 dispersed
Mch1g1230 Mch-Chr1:14640885 Mch11g0325 Mch-Chr11:2005560 6.49E-97 wgd
Mch1g1230 Mch-Chr1:14640885 Mch2g1266 Mch-Chr2:8784493 1.10E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42733 PF03106 WRKY 4.30E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1230 - - - 0.0