Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1234 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATTCAGCTCCAACTGTCCAAAGACGAAATAGTAAAGGAGATCATTCAACATCTATTTTATCTACATCTGGCATATCATCTTGGGCTAAGAGTTTCAGAACTCCGCAATCACCTGAAGCAGCAGAAAATGACTCCAAGGCAGGAAATTCTGGGATGTCAGCAATTGCACGTTTCGGTAGTGGCTTTGGACTGAGGATACCTTCAATGTCCCCAGTACGAGGTGATGGTGCTGCAGATTCCAAATCCGCAACACAATCTGGTGTTTTTGAATCCTTCACAAAAGGTTTAGTTGACACATCCCAGAGTGCAGTAAAGGCTATGCAGATAAAGGCACGCCATATTGTCTCTCAAAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACGTATATCACTGAAAACATAATTGCTATGGGATTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATACCTTGAGGGATTTTATAGAAATCATATGGAAGAAGTGATCAAATTTTTCGAAACTCATCATAAGGGAACATACAAAGTTTACAATCTTTGCTCCGAGCGTTTGTATGATGCTTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGACGATCATAATTGTCCCCCTATCCACCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCTAGGACCGGGCTAATGATATGCAGCCTTCTTTTATTCCTCAAGTTCTTCCAAACATTCGAGGAGGCAATTGATTACTATAATCAGAAAAGATGTGTGGATGGGAAAGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAACGCATATTAACACATTTCAGTGGAGATACTCCACCTGGACGGAGGTGCATGCTGAGAGGTTTCCGGCTTCACAAGTGCCCTTATTGGGTTAGGCCTTCCATTACAATCTCAAATCACAGTGAGATCTTGTTCTCAACAAAAAACCATCCAAAGACAAAGAATTTAATGCCAGAAGATTTCTGGATGAGGGCACCAAAGAAAGGATTTGTGGTCTTTGCGCTGCCAGGTGAACCTGGTTTGACAGAGTTGACTGGGGACTTCAAGATTCATTTTCATGACCGCCACGGAGATTTTTACTGTTGGTTAAATACAAGAATGACAGAAAACAAAGTATTATTAAATGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACACCTGGATTCCAGATCGAAGTTGTGATGATAGACTATGATGGTACTTTGCCAAGACGATTGAAAACTGATTCTGCTGGCAAGGGATCTGATCGTCGCTCTATTCACGATCAGGCGTCTGGTCATGAAGCAGAACAATCCAGCAAAAGTAAAAATCTCGGGGTTGAAGAAACTGACGACAATGTATTCTCTGATAGTGATGAAGAAAATGGCGACACAAAAACCAGGCTAGATCAGTCTACTGCAAAAGCAGATCATTCATCAACAGCAGTTGCTTCTGAAAAAATTGGCACTTTAGCACATGAAACTAGTCATTTGTCGCTCAGGAATGAGAAAAGCACACAAACGAATGCTTCAAAAGAACCAAACTTTGATGGTGCAATACAACCGTCAGGCCTTGACATCCCAAATCTGGATTCAGCAAGGGCAAGTGATTTCAAGGCAATAGCCGCTGATGCATCGGTTTTCACGTTTGGGGATGAAGAAGACTTTGATAGCGAATGA 1809 40.96 MDNGTSNSSTQSAVNNSAPTVQRRNSKGDHSTSILSTSGISSWAKSFRTPQSPEAAENDSKAGNSGMSAIARFGSGFGLRIPSMSPVRGDGAADSKSATQSGVFESFTKGLVDTSQSAVKAMQIKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGYLEGFYRNHMEEVIKFFETHHKGTYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTFEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFSGDTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKNLMPEDFWMRAPKKGFVVFALPGEPGLTELTGDFKIHFHDRHGDFYCWLNTRMTENKVLLNDTDLDGFDKRKLPTPGFQIEVVMIDYDGTLPRRLKTDSAGKGSDRRSIHDQASGHEAEQSSKSKNLGVEETDDNVFSDSDEENGDTKTRLDQSTAKADHSSTAVASEKIGTLAHETSHLSLRNEKSTQTNASKEPNFDGAIQPSGLDIPNLDSARASDFKAIAADASVFTFGDEEDFDSE 602
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 14663349 14672762 + MC01g0883 Mch1g1234 676126
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1234 602 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Mch1g1234 602 MobiDBLite consensus disorder prediction 502 516 - -
Mch1g1234 602 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 542 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Mch1g1234 602 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Mch1g1234 602 MobiDBLite consensus disorder prediction 454 493 - -
Mch1g1234 602 MobiDBLite consensus disorder prediction 544 559 - -
Mch1g1234 602 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 314 IPR029021 -
Mch1g1234 602 Pfam PTEN2, C2 domain 321 449 - -
Mch1g1234 602 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Mch1g1234 602 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Mch1g1234 602 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Mch1g1234 602 MobiDBLite consensus disorder prediction 542 567 - -
Mch1g1234 602 CDD PTP_PTEN 145 310 IPR045101 GO:0016791(InterPro)
Mch1g1234 602 MobiDBLite consensus disorder prediction 1 64 - -
Mch1g1234 602 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 213 269 - -
Mch1g1234 602 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Mch1g1234 602 SMART PTEN_C2_2 319 447 IPR014020 -
Mch1g1234 602 MobiDBLite consensus disorder prediction 454 527 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1234 Mch-Chr1:14663349 Mch8g2431 Mch-Chr8:27315402 4.81E-43 dispersed
Mch1g1234 Mch-Chr1:14663349 Mch4g0722 Mch-Chr4:4880494 9.37E-248 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1234 K01110 - csv:101213277 1047.34