Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g1234 | ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATTCAGCTCCAACTGTCCAAAGACGAAATAGTAAAGGAGATCATTCAACATCTATTTTATCTACATCTGGCATATCATCTTGGGCTAAGAGTTTCAGAACTCCGCAATCACCTGAAGCAGCAGAAAATGACTCCAAGGCAGGAAATTCTGGGATGTCAGCAATTGCACGTTTCGGTAGTGGCTTTGGACTGAGGATACCTTCAATGTCCCCAGTACGAGGTGATGGTGCTGCAGATTCCAAATCCGCAACACAATCTGGTGTTTTTGAATCCTTCACAAAAGGTTTAGTTGACACATCCCAGAGTGCAGTAAAGGCTATGCAGATAAAGGCACGCCATATTGTCTCTCAAAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACGTATATCACTGAAAACATAATTGCTATGGGATTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATACCTTGAGGGATTTTATAGAAATCATATGGAAGAAGTGATCAAATTTTTCGAAACTCATCATAAGGGAACATACAAAGTTTACAATCTTTGCTCCGAGCGTTTGTATGATGCTTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGACGATCATAATTGTCCCCCTATCCACCTCATAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCTAGGACCGGGCTAATGATATGCAGCCTTCTTTTATTCCTCAAGTTCTTCCAAACATTCGAGGAGGCAATTGATTACTATAATCAGAAAAGATGTGTGGATGGGAAAGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAACGCATATTAACACATTTCAGTGGAGATACTCCACCTGGACGGAGGTGCATGCTGAGAGGTTTCCGGCTTCACAAGTGCCCTTATTGGGTTAGGCCTTCCATTACAATCTCAAATCACAGTGAGATCTTGTTCTCAACAAAAAACCATCCAAAGACAAAGAATTTAATGCCAGAAGATTTCTGGATGAGGGCACCAAAGAAAGGATTTGTGGTCTTTGCGCTGCCAGGTGAACCTGGTTTGACAGAGTTGACTGGGGACTTCAAGATTCATTTTCATGACCGCCACGGAGATTTTTACTGTTGGTTAAATACAAGAATGACAGAAAACAAAGTATTATTAAATGACACAGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACACCTGGATTCCAGATCGAAGTTGTGATGATAGACTATGATGGTACTTTGCCAAGACGATTGAAAACTGATTCTGCTGGCAAGGGATCTGATCGTCGCTCTATTCACGATCAGGCGTCTGGTCATGAAGCAGAACAATCCAGCAAAAGTAAAAATCTCGGGGTTGAAGAAACTGACGACAATGTATTCTCTGATAGTGATGAAGAAAATGGCGACACAAAAACCAGGCTAGATCAGTCTACTGCAAAAGCAGATCATTCATCAACAGCAGTTGCTTCTGAAAAAATTGGCACTTTAGCACATGAAACTAGTCATTTGTCGCTCAGGAATGAGAAAAGCACACAAACGAATGCTTCAAAAGAACCAAACTTTGATGGTGCAATACAACCGTCAGGCCTTGACATCCCAAATCTGGATTCAGCAAGGGCAAGTGATTTCAAGGCAATAGCCGCTGATGCATCGGTTTTCACGTTTGGGGATGAAGAAGACTTTGATAGCGAATGA | 1809 | 40.96 | MDNGTSNSSTQSAVNNSAPTVQRRNSKGDHSTSILSTSGISSWAKSFRTPQSPEAAENDSKAGNSGMSAIARFGSGFGLRIPSMSPVRGDGAADSKSATQSGVFESFTKGLVDTSQSAVKAMQIKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGYLEGFYRNHMEEVIKFFETHHKGTYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTFEEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFSGDTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTKNHPKTKNLMPEDFWMRAPKKGFVVFALPGEPGLTELTGDFKIHFHDRHGDFYCWLNTRMTENKVLLNDTDLDGFDKRKLPTPGFQIEVVMIDYDGTLPRRLKTDSAGKGSDRRSIHDQASGHEAEQSSKSKNLGVEETDDNVFSDSDEENGDTKTRLDQSTAKADHSSTAVASEKIGTLAHETSHLSLRNEKSTQTNASKEPNFDGAIQPSGLDIPNLDSARASDFKAIAADASVFTFGDEEDFDSE | 602 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14663349 | 14672762 | + | MC01g0883 | Mch1g1234 | 676126 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g1234 | 602 | Gene3D | Protein tyrosine phosphatase superfamily | 120 | 317 | IPR029021 | - | |
Mch1g1234 | 602 | MobiDBLite | consensus disorder prediction | 502 | 516 | - | - | |
Mch1g1234 | 602 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 122 | 542 | IPR051281 | GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER) | |
Mch1g1234 | 602 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 249 | 288 | IPR000387 | GO:0016311(InterPro) | |
Mch1g1234 | 602 | MobiDBLite | consensus disorder prediction | 454 | 493 | - | - | |
Mch1g1234 | 602 | MobiDBLite | consensus disorder prediction | 544 | 559 | - | - | |
Mch1g1234 | 602 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 148 | 314 | IPR029021 | - | |
Mch1g1234 | 602 | Pfam | PTEN2, C2 domain | 321 | 449 | - | - | |
Mch1g1234 | 602 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 251 | 261 | IPR016130 | GO:0016311(InterPro) | |
Mch1g1234 | 602 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 | 120 | 317 | - | - | |
Mch1g1234 | 602 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 135 | 314 | IPR029023 | - | |
Mch1g1234 | 602 | MobiDBLite | consensus disorder prediction | 542 | 567 | - | - | |
Mch1g1234 | 602 | CDD | PTP_PTEN | 145 | 310 | IPR045101 | GO:0016791(InterPro) | |
Mch1g1234 | 602 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Mch1g1234 | 602 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 213 | 269 | - | - | |
Mch1g1234 | 602 | ProSiteProfiles | C2 tensin-type domain profile. | 321 | 448 | IPR014020 | - | |
Mch1g1234 | 602 | SMART | PTEN_C2_2 | 319 | 447 | IPR014020 | - | |
Mch1g1234 | 602 | MobiDBLite | consensus disorder prediction | 454 | 527 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1234 | Mch-Chr1:14663349 | Mch8g2431 | Mch-Chr8:27315402 | 4.81E-43 | dispersed | |
Mch1g1234 | Mch-Chr1:14663349 | Mch4g0722 | Mch-Chr4:4880494 | 9.37E-248 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch1g1234 | K01110 | - | csv:101213277 | 1047.34 |