Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1237 ATGGCTCTGCAGGACGATGAAGCCCAGGTTCAAGAGATTGAAACTCAATCCTTACTCCTTGATGCTCTCTTCTGTGAAGAGCTCTGCTGCGAGGAAGATTTGGGCGGAAATGGGATCCATGAAGATGGGGAGTACTGTGAAACTCTGAGAAAGGACCAGCATTTTCTCACTTTGAATTTGATAGAAAACGACCCACTTTGGGAGGACAACCAGCTGCAGTCTCTAATTTCAAAACAAGAACAAACCCTTGTTTGTCATGCTTCTGTGAGCTCTGATGGGTATCTAATCGAGGCTCGGAGAGAGGCATTGGCATGGATTTTTAGAGTCAAACATCACTACGCCTTCTCTGCTTTGACCTCTCTTCTTGCCGTTAACTACTTTGATAGATTCGTTTCAAATGTGAGATTCCAGAGGGACAAGCCATGGATGACTCAGCTCGCGGCTATTGCTTGTCTCTCGCTCGCCGCCAAGGTGGAGGAGACCCAAGTGCCCCTTCTTCTGGACCTTCAAGTGGTAGAATCTAAGTTTGTATTTGAGGCCAAGACCGTCCAGAGAATGGAGCTTCTGGTGTTGTCAGCTCTTCAATGGAAGATGCATCCAATAACCCCCATTTCCTTCTTCCATCACATTATCAGGAGGTTGCCTTTGAAGAATCATATGCTTTGGGAAGTTCTTGGGAGGTTTCAGAGCCTTCTCCTCTCGATCCTATCTGATCATAGATTCTTGTGCTACCTGCCTTCTGTCTTGGCCACTGCAATAATATTGCACATCATTAGTGAGATTGAGCCATATAACTTCTCAGAATATCAGAATCAGCTCCTCAGCGTACTTAAAATTAATAAGAATCACCTAGATGAATGCTACAAGTTCATCCTTGATTCACTGGGCAGTCATTGCAATTTACAAAATCCTAGTAACAGAAGCAAGCAAATGTGTGAACCGGGCAGCCCATGCGATGTTATAGATGGATACTTCATCTCCGACTCCTCAAACGATTCATGGCCAACGGTATCATCTATCTCACCCTAG 1029 45.0 MALQDDEAQVQEIETQSLLLDALFCEELCCEEDLGGNGIHEDGEYCETLRKDQHFLTLNLIENDPLWEDNQLQSLISKQEQTLVCHASVSSDGYLIEARREALAWIFRVKHHYAFSALTSLLAVNYFDRFVSNVRFQRDKPWMTQLAAIACLSLAAKVEETQVPLLLDLQVVESKFVFEAKTVQRMELLVLSALQWKMHPITPISFFHHIIRRLPLKNHMLWEVLGRFQSLLLSILSDHRFLCYLPSVLATAIILHIISEIEPYNFSEYQNQLLSVLKINKNHLDECYKFILDSLGSHCNLQNPSNRSKQMCEPGSPCDVIDGYFISDSSNDSWPTVSSISP 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14685965 14687857 + MC01g0886 Mch1g1237 676129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1237 342 FunFam D6-type cyclin 83 199 - -
Mch1g1237 342 SUPERFAMILY Cyclin-like 183 293 IPR036915 -
Mch1g1237 342 CDD CYCLIN_AtCycD-like_rpt1 98 196 - -
Mch1g1237 342 Gene3D - 85 199 - -
Mch1g1237 342 Gene3D - 73 289 - -
Mch1g1237 342 Pfam Cyclin, N-terminal domain 75 198 IPR006671 -
Mch1g1237 342 CDD CYCLIN_AtCycD-like_rpt2 201 289 - -
Mch1g1237 342 SUPERFAMILY Cyclin-like 66 199 IPR036915 -
Mch1g1237 342 PANTHER CYCLINS 84 291 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch1g1237 342 SMART Cyclin_C_2 201 317 IPR004367 -
Mch1g1237 342 SMART cyclin_7 104 192 IPR013763 -
Mch1g1237 342 Pfam Cyclin, C-terminal domain 201 301 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1237 Mch-Chr1:14685965 Mch8g0255 Mch-Chr8:1702853 3.33E-47 dispersed
Mch1g1237 Mch-Chr1:14685965 Mch10g0481 Mch-Chr10:3122085 4.86E-96 wgd
Mch1g1237 Mch-Chr1:14685965 Mch11g0329 Mch-Chr11:2026838 1.16E-79 wgd
Mch1g1237 Mch-Chr1:14685965 Mch4g0724 Mch-Chr4:4900652 5.78E-69 wgd
Mch1g1237 Mch-Chr1:14685965 Mch8g0665 Mch-Chr8:4726293 1.12E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1237 K14505 - csv:101216655 539.65