Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1245 ATGACGTGGTCTTTTGGTTTGAGAAAACATATCCTCCATCTTCTCCGGGTTCATTTCTACGATATCATCGGTAAATCCACTGATCATTTTCTAGTCTTCAATTTGTACATAGGCGATAGATACTGTATAATGATTGACCCTCCTCAAGGTGATAATACGATCGCGAGCATCCCATTTCATCATGATTTCTTGGTGGATTCTGGAGGAAGTGAGTTTCTTAAAGTCAGTGTGTGTCCTCTGGGTCATAGCCAATCTGCACAGTTTAGCGCTTATCTGAATGGGGTTGAGATTATGGAAGCCATGGATGAACGTAGCAACGATCCTCCCATCAGCGATCCTGAGGAAAAGAAGAACAAACATTCGGGTCTTTTCGTGGGTTTGGGTGTTGGGGCTTTTGGGTTGCTCTGCATTTTAGGCTGTGGAATCTGGTTTTGTCTGAAACGAAGGAACCCAAAAACTAAACAACCTGGCCGCTCTCTCACCATGTTTACTAAGAGAACCTCAAGCAGCACTCCCATCCCTAACTTGAATCTTGGCCTCAAGTTTTCGCTTGCCCAAATCAAAACTGCCACCAACAATTTCAACCACAAATTCCTTGTTGGTGAGGGTGGTTTTGGGAAAGTCTACAAGGGAACTCTGAGGAATGGCATGAAAGTAGCTGTGAAGCGAAGCCAGCCCGGGGCTGGACAAGGCATTCCCGAGTTCGAGAGTGAGATCACGATCTTGTCTCGAATTCGCCATCGCCATCTCGTTTCGTTTATCGGGTATTGTGACGAAGGATTGGAGATGATTCTGGTTTATGAGTTCATGGAGAATGGCACTTTGAGGGAACATCTCTACGACTCAAAGTTGCCTCCTCTGCCTTGGAAGAAAAGGCTTGAAATCTGCATTGGTGCAGCCAAAGGCCTGAATTACCTACACAAAGGCTCAGCTGGGGGAATCATTCACCGCGATGTCAAATCCACTAACATCTTGCTCGATGAGAACCTGGTTGCTAAAGTTTCTGACTTTGGCCTTTCAAGAGCAGGCCCTGTTGATGAAACTCACGTCAGCACAGACATTAAAGGGACATTCGGGTACTTGGATCCGGAGTATTTCCGAACCCAACAGCTGACAGAGAAATCCGATGTGTACTCATTCGGCGTGCTTCTATTGGAAGTTCTATGTGCAAGGCCAGCTCTGAATCCAGCGCTTCCAAGAGAGCAGATAAATCTAGCAGAATGGGGATTGAGGTGCAAGAAAATGGAGTTGCTTGAAGAGATCATTGACCCCAAATTGGAGGGTCAGATCAATCCCAACTCCTTGAGAAAGTTAAGTGATACAGCGGAGAAATGCTTGCAAGATGATGCCGCTGATAGGCCTACAATGGCAAACGTGCTGTGGGACTTGGAATATGCATTGCAGCTGCAACTTCAGCAAAGCGCACACTCGAGAATGCCTCATGAGGACAGTGAAACCAATGCCAATGGCAGCGTCTCATGGACAGCCATTCGACGTTTTCCTTCGATCGGTTCTTCGATGATGAGGGATGATCCAAATATGAGTCAAGATTTGGACACTCACACTCACTTAACTGCCAGTGAAGTTTTCTCTCTATTGAAGGCAGCTGATGGCAGGTAA 1620 46.3 MTWSFGLRKHILHLLRVHFYDIIGKSTDHFLVFNLYIGDRYCIMIDPPQGDNTIASIPFHHDFLVDSGGSEFLKVSVCPLGHSQSAQFSAYLNGVEIMEAMDERSNDPPISDPEEKKNKHSGLFVGLGVGAFGLLCILGCGIWFCLKRRNPKTKQPGRSLTMFTKRTSSSTPIPNLNLGLKFSLAQIKTATNNFNHKFLVGEGGFGKVYKGTLRNGMKVAVKRSQPGAGQGIPEFESEITILSRIRHRHLVSFIGYCDEGLEMILVYEFMENGTLREHLYDSKLPPLPWKKRLEICIGAAKGLNYLHKGSAGGIIHRDVKSTNILLDENLVAKVSDFGLSRAGPVDETHVSTDIKGTFGYLDPEYFRTQQLTEKSDVYSFGVLLLEVLCARPALNPALPREQINLAEWGLRCKKMELLEEIIDPKLEGQINPNSLRKLSDTAEKCLQDDAADRPTMANVLWDLEYALQLQLQQSAHSRMPHEDSETNANGSVSWTAIRRFPSIGSSMMRDDPNMSQDLDTHTHLTASEVFSLLKAADGR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14733949 14737022 - MC01g_new0353 Mch1g1245 676137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1245 539 PANTHER OS07G0166700 PROTEIN 181 470 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Mch1g1245 539 CDD STKc_IRAK 200 464 - -
Mch1g1245 539 ProSiteProfiles Protein kinase domain profile. 194 466 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1245 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1245 539 Gene3D Phosphorylase Kinase; domain 1 159 269 - -
Mch1g1245 539 SMART serkin_6 194 466 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1245 539 FunFam Receptor-like protein kinase FERONIA 270 487 - -
Mch1g1245 539 Pfam Protein tyrosine and serine/threonine kinase 200 461 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1245 539 ProSitePatterns Protein kinases ATP-binding region signature. 200 222 IPR017441 GO:0005524(InterPro)
Mch1g1245 539 Gene3D Transferase(Phosphotransferase) domain 1 270 491 - -
Mch1g1245 539 FunFam receptor-like protein kinase FERONIA 158 269 - -
Mch1g1245 539 SUPERFAMILY Protein kinase-like (PK-like) 180 474 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1245 Mch-Chr1:14733949 Mch2g0950 Mch-Chr2:6409779 4.73E-152 dispersed
Mch6g0685 Mch-Chr6:4644318 Mch1g1245 Mch-Chr1:14733949 2.18E-69 dispersed
Mch1g1245 Mch-Chr1:14733949 Mch1g1246 Mch-Chr1:14737877 1.14E-273 tandem
Mch1g1245 Mch-Chr1:14733949 Mch2g1276 Mch-Chr2:8902422 4.76E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77130 PF07714 PK_Tyr_Ser-Thr 5.60E-50 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1245 - - - 0.0