Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1272 ATGGGTCGCGTCAATCCCCTTATTGCATTCTCCCTTCTCTCTCTCTCCCTCGTCTGCTTCTTCCCTTCCCCCACTCTCGCCCAACTCCGACAAAACTTCTACGCCAACATCTGCCCAAATGTCGAAAACATAGTCCGCGCCGAAGTTAACAAGAAATTTCAGCAAACTTTCGTCACTGTTCCCGCCACACTCCGCCTCTTCTTCCACGATTGCTTTGTTCAGGGATGTGATGCATCCGTCATTGTCGCTTCCACCGCATCCAACAAGGCCGAGAAGGACCATCCCGATAACCTCTCCTTGGCCGGAGATGGATTCGACACCGTCATCAAGGCTAAGGCCGCCCTCGACGCCGTCCCTCAATGCCGAAACAGAGTCTCCTGCGCCGATATTCTCGCTCTCGCTACCCGTGACGTCATCGCACTGTCCGGCGGGCCGTCGTACGCGGTGGAGCTGGGAAGATTAGACGGCCTTGTTTCGAGGGCGTCCGACGTGGAGGGGAAACTCCCGGCTCCGACCTTTAATCTCAATCAGCTCAATTCTCTGTTTGCCGCGAATGGTCTTACGCAGCAGGACATGATCGCTCTCTCAGCGGCTCACACCGTTGGATTCTCCCACTGCGGGAAGTTCGCGAACCGAATTTACAGCTTTGCCCCCGGGAATCCAGTGGACCCCTCACTGAACAGAACGTATGCAACCCAGCTACAGCAGATGTGCCCTAAGAACGTGGACCCCAGAGTGGCCATCAACATGGACCCCATCACGCCCAGAAGATTTGACAACATATACTTTAGGAACCTCCAGCAGGGAATGGGCCTGTTCACGTCGGACCAGGTTCTCTTCACCGACGGCAGGTCCAGGCCCACAGTCGACGACTGGGCCCGCAACTCCAACGCCTTTAACGCGGCCTTTATTCAAGCCATGACCAAGTTGGGCCGGGTCGGAGTCAAGACCGGTAGCAACGGGAACATCCGACGCGATTGTGGAGCTTTCAATTAA 996 55.92 MGRVNPLIAFSLLSLSLVCFFPSPTLAQLRQNFYANICPNVENIVRAEVNKKFQQTFVTVPATLRLFFHDCFVQGCDASVIVASTASNKAEKDHPDNLSLAGDGFDTVIKAKAALDAVPQCRNRVSCADILALATRDVIALSGGPSYAVELGRLDGLVSRASDVEGKLPAPTFNLNQLNSLFAANGLTQQDMIALSAAHTVGFSHCGKFANRIYSFAPGNPVDPSLNRTYATQLQQMCPKNVDPRVAINMDPITPRRFDNIYFRNLQQGMGLFTSDQVLFTDGRSRPTVDDWARNSNAFNAAFIQAMTKLGRVGVKTGSNGNIRRDCGAFN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14928910 14930922 + MC01g0916 Mch1g1272 676164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1272 331 PRINTS Plant peroxidase signature 265 282 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 249 264 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Mch1g1272 331 CDD secretory_peroxidase 28 330 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Mch1g1272 331 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Mch1g1272 331 Gene3D Peroxidase, domain 2 169 310 - -
Mch1g1272 331 FunFam Peroxidase 32 177 - -
Mch1g1272 331 SUPERFAMILY Heme-dependent peroxidases 28 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Haem peroxidase superfamily signature 251 266 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 PANTHER - 16 331 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 ProSiteProfiles Plant heme peroxidase family profile. 28 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 FunFam Peroxidase 169 310 - -
Mch1g1272 331 Pfam Peroxidase 45 295 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1272 331 Gene3D - 32 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1272 Mch-Chr1:14928910 Mch4g2597 Mch-Chr4:26306352 8.43E-120 dispersed
Mch11g0625 Mch-Chr11:4018474 Mch1g1272 Mch-Chr1:14928910 5.46E-139 transposed
Mch2g1334 Mch-Chr2:9447582 Mch1g1272 Mch-Chr1:14928910 3.26E-180 transposed
Mch1g1272 Mch-Chr1:14928910 Mch2g0799 Mch-Chr2:5500397 7.26E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1272 K00430 - csv:101206860 600.897