Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1274 ATGAGTTGCAACGGCTGCCGTGTTCTCCGAAAAGGATGCAGCGAATCCTGTATTCTTCGCCCTTGTTTGCAGTGGATTGACACTTCCGAAGCCCAAGGCCACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGCGCCGGCCTTATGTCCTTCATCTCCGCCGTCCCTCAATCTCAAAGACCTTCTCTGTTTCAGTCCTTGTTGTTCGAAGCCTGTGGACGGACGGTTAATCCGGTGAACGGAGCCGTTGGCCTTCTTTGGACTGGGAACTGGCATGTCTGTCAGGCGGCGGTGGAGACGGTGCTGCGAGGAGGTACTTTGCGCCCGATGAACGAGTTTCTCGCCGGAGGAGGATCTCCGTCCGACGAAACGTCGTCTGAGGCTGAAGTGGCCTGTACCGACATGTGGAAGCTACGAGATTCTTATCCCAATTCTCGATTCTCCAATTCGCGATCCAGGCTCTCTCCCAAGCGGAAGCGATCGGATCAGGAATCCACGACGAAGCAGCAACTCAACGACCTAGATCTCCGCTTGACGCCCATTTTTCCGGCGAAATCGACCCGGCGGGCGGGAACTCCGTCGATGAATTCGGAGGAATCCGAGACCACCACGTGCTTCGAGAGCGGCCTCGGGGATCACCATCATCATCAGTATCCACAACCAGAAGGCGGCCAACGGAAGCTTCTGAATTTGTTCGTCTAA 702 56.13 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMNEFLAGGGSPSDETSSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSDQESTTKQQLNDLDLRLTPIFPAKSTRRAGTPSMNSEESETTTCFESGLGDHHHHQYPQPEGGQRKLLNLFV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14957182 14958816 - MC01g0918 Mch1g1274 676166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1274 233 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Mch1g1274 233 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Mch1g1274 233 MobiDBLite consensus disorder prediction 189 207 - -
Mch1g1274 233 MobiDBLite consensus disorder prediction 143 223 - -
Mch1g1274 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 232 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1274 Mch-Chr1:14957182 Mch8g1294 Mch-Chr8:9423086 1.03E-50 dispersed
Mch1g1274 Mch-Chr1:14957182 Mch11g0355 Mch-Chr11:2185633 2.33E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42736 PF03195 LOB 1.80E-25 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1274 - - - 0.0