Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1286 ATGGGGAAGAAACAGCACAGTAAAGACCGTTTGTTCATTACGAAAACTGAATGGGCCACCGAATGGGGTGGTGCCAAACCTAAGGACTCTCAAACCCCTTTCAAACGACTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTATGTACCGCCGATGGCAGCGTCTTCGAGATAATGAATATCATCCCTTATATCCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTACCTTGAAGCAGGAGGATCTAATTCCACTCATTTTCCACAAAAATTCTGAAGGCGAGTTCCAGTGCCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAACGTCTTCTGCTATGAGGCAATTAAAGAATTAAATGTCAAGACAAAAAACTGGAAGGAGCTTCTAACTGATGAACCGTTTAGTAGGGAAGATATTATAACCATTCAGAACCCTAGCGCCCTTGATAGTAAGGTCCTCCTGGATTTTGATCATGTGAAAAATAGCCTGAAAGTTGATGATGAAGAACTCCAGAAAATGAAATCAGATCCAGCATATAACATAAATGTGTCGGGAGACATCAAGCAGATGCTGGAGGAGCTTGGAACTGAGAAAGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGCGGCTGCACTTGCCGATATTTTAGCTGCTAGGTCACGCATCAAAGAGGATACCAAGGCAAATGCCAAAGGGGAGGAGAAACCTACTCAGGCATACAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAACTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCGGTGAATGCAAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGATCCTTCACGTCTACATCTTATGATCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAATCCAAAGAAGAAAGGCTATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAATTGCATTGTGATATTACTCCAAGGACGTGTGAGAATTTCATTACACTTTGTGAAACTGGCTACTACAATGGAGTTGCTTTTCACAGAAATATAAGGAATTTTATGATTCAAGGTGGTGATCCTACTGGTACTGGGAGAGGAGGCGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGTTTCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGCCCCCACACTAATGGCTCCCAGTTCTTTATTCTCTATAAATCTGCCAACCACTTAAACTTTAAGCATACAGTATTTGGTGGCGTTGTTGGTGGTTTGACTACTTTGGCAGCGATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGTGTCACAGTATTTGTCAATCCATACTCAGAACCCGATGAAGAAGAGGAAAAGCAGAAGGACGAGAAGAATGTTGAAGATGAAGAAAATGACAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGAGTAGCTGGAGATGGAGCTGGCGGTGGTGGTGTAGGGAAATATTTGAAAGCAAGGAATCAAGTCAAATCCCCTGCAGTTGATGCTAGTCTAAGAGAAACAACCTCAACCAAGAAAAGGACAGCCGCCGGAGAATTCAAAGACTTCTCTTCGTGGTAA 1776 43.64 MGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGATLKQEDLIPLIFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAIKELNVKTKNWKELLTDEPFSREDIITIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPAYNINVSGDIKQMLEELGTEKGRQTALHGGGGGKAQKERAAALADILAARSRIKEDTKANAKGEEKPTQAYSIVDAASASVHGRSAAAAKAAPTEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCETGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKFLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAGDGAGGGGVGKYLKARNQVKSPAVDASLRETTSTKKRTAAGEFKDFSSW 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15038709 15042926 - MC01g0930 Mch1g1286 676178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1286 591 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Mch1g1286 591 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 339 507 IPR044666 GO:0000209(PANTHER)|GO:0061630(PANTHER)|GO:0071013(PANTHER)
Mch1g1286 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 95 IPR013083 -
Mch1g1286 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch1g1286 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch1g1286 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch1g1286 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch1g1286 591 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch1g1286 591 SUPERFAMILY RING/U-box 37 104 - -
Mch1g1286 591 MobiDBLite consensus disorder prediction 508 530 - -
Mch1g1286 591 Gene3D - 328 515 IPR029000 -
Mch1g1286 591 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g1286 591 Pfam U-box domain 39 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g1286 591 Coils Coil 508 528 - -
Mch1g1286 591 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch1g1286 591 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
Mch1g1286 591 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch1g1286 591 CDD cyclophilin_RING 350 508 - -
Mch1g1286 591 SUPERFAMILY Cyclophilin-like 350 517 IPR029000 -
Mch1g1286 591 SMART Ubox_2 39 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch1g1286 591 MobiDBLite consensus disorder prediction 504 591 - -
Mch1g1286 591 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Mch1g1286 591 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1286 Mch-Chr1:15038709 Mch4g0674 Mch-Chr4:4472507 5.39E-33 dispersed
Mch11g0430 Mch-Chr11:2695624 Mch1g1286 Mch-Chr1:15038709 5.33E-39 transposed
Mch3g0652 Mch-Chr3:10946006 Mch1g1286 Mch-Chr1:15038709 1.08E-41 transposed
Mch5g0327 Mch-Chr5:2233877 Mch1g1286 Mch-Chr1:15038709 7.46E-56 transposed
Mch5g1593 Mch-Chr5:16881180 Mch1g1286 Mch-Chr1:15038709 1.01E-46 transposed
Mch1g1286 Mch-Chr1:15038709 Mch2g0840 Mch-Chr2:5746680 5.09E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1286 K10598 - csv:101204462 1028.85