Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1291 | ATGGAAAGGTTTTTGGAGGAGAATTTTGGGGGTGTCAAACCAAAAAACTCGTCTGAGGAGGTGTTGCAAAGGTGGAGGGAGCTTTGTGGAGTTGTCAAGAACCCCAAAAGGAGGTTTCGCTTCACCGCCAATCTCTCCAAACGTGGCGAAGCTGCTGCTATGCGCCAGAACAATCAGGAGAAGTTGAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAGTTCATCCAAGGTGTAGTTCTGGAATTTGACAAAGTAATGTGGTTATGTAAGGTGTTTTTCTCATATTTGATGGAACTTGTCGTGGTATCTGGTGTGCAACCGAGTGATTATAATGTTCCGGAGGAAGTCAAAGCTGCAGGTTTCCAAATTTGTGCTGATGAGCTCGGGTCTATTGTTGAAGGCCATGACCCAAAGAAGTTTAAACATCATGGTGGGGTTGAAGGGATTGCAGGAAAGCTCTGTACATCAACAACAAATGGGCTTAATAGCGATCCTGATGCACTCAATCGCAGGCAAGAAATTTATGGAGTTAACAAATTTGCTGAGAGCGAACAGAGGAGTTTCTTGGTGTTCGTTTGGGAGGCCCTCCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTTGTCTCTTTGGTAGTTGGCATAATAACAGAGGGGTGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCCAGTATCTTACTAGTTGTATTTGTCACGGCAACTAGTGATTATCGACAATCCTTACAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTCACAAGGAATGGTTATAGACAGAAAATGTCGATTTACGATTTACTTCCTGGAGATATTGTACACCTGTCTATTGGGGATCAAGTCCCTGCAGATGGACTCTTTGTTTCAGGGTTCTCTGTGTTGATTGATGAGTCAAGTTTGACTGGAGAAAGTGAGCCAGTGATGGTGACTGCAGAGAACCCATATCTTCTATCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACACAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGACGAAACTCCATTGCAGGTGAAATTGAATGGAGTGGCAACAATTATTGGGAAAATAGGTCTATTCTTTGCCATTATCACTTTCGCTGTGTTGGTTCAAGGATTGGTTAGCCGTAAACTTCGAGAAGGGACTCACTGGAGTTGGTCTGCAGACGATGCCTTAGAGATATTGGAATTCTTTGCTGTTGCAGTCACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACGTTGAGCCTTGCCTTCGCCATGAAGAAGATGATGAATGATAAAGCACTGGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGTAGTGACAAGACTGGAACAATCACCACAAATCGCATGACAGTAGTTAAATCATGCATTTGCATGAATGTCAAGGAATCAAGTAATAATGTTTCAAGCTTCTGTTCTGACCTTCCAGCCTCTCTTATCAAACTTCTCCAACAATCAATATTCAACAACACTGGGGGAGAAGTTGTAATCAACAAAGATGGCAAGCGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTCTCACTTGGTGGGGATTTTCAGGCTGAGAGACAGGCAGCTAAACTTATTAAAGTTGAGCCATTCAACTCTGAGAAAAAACGGATGGGTGTTGTCTTACAATTTCCTGAAGGTGGTTTCCGTGCTCACACTAAAGGTGCTTCAGAAATAGTGTTGGCTGCCTGTGACAAGGTGATCAATTCGAGTGGTGAGGTTGTTCCTTTAGATGAAGCTTCCATCAAGCATCTCAATGTTATTATCAATCAGTTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAAAGATCCTATTCCAGTTTCTGGTTATACCTGTATAGGTATAGTGGGTATTAAAGATCCCGTTCGTCCCGGTGTTAAAGAGTCAGTTGCGGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACAGCTAAAGCTATTGCTAGAGAATGTGGAATTCTCACAGATGATGGCATTGCCATTGAGGGTCCAGATTTCAGAGAGAAGACCCTAGACGAATTGCTTAAAATTATTCCCAAAATTCAGGTGATGGCTCGATCTTCACCTCTTGATAAGCACACTCTGGTCAAGCATTTGCGGACCACTTTTGATGAAGTTGTTGCTGTTACTGGTGATGGGACAAACGATGCTCCTGCTCTTCACGAAGCAGATATTGGTCTTGCAATGGGCATTGCTGGAACTGAGGTTGCCAAAGAGAGTGCTGATGTGATAATTCTCGATGATAATTTCTCCACCATAGTGACTGTGGGAAAATGGGGTCGTTCCGTTTACATAAATATTCAAAAATTTGTGCAGTTCCAGCTGACTGTAAACATAGTAGCGTTGATCGTAAACTTCTCTTCAGCTTGTGTGACAGGTAGTGCTCCTCTTACGGCAGTCCAGCTCTTGTGGGTGAACATGATAATGGATACACTTGGAGCGCTGGCACTCGCCACTGAGCCTCCAAATGATGAATTGATGAAGCGCTTACCTGTTGGGAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGGAATATATTGGGGCAATCCTTGTATCAGTTCTGCGTGATATGGTTTCTGCAGGCGAAAGGAAAAGCAATGTTTGATCTCGAGGGCCCTGGTTCCGATTTGATACTGAATACGCTCATCTTCAATTCCTTTGTGTTCTGTCAGATTTTCAACGAAATAAGTTCCAGGGAGATGGACAAAATCAATGTGTTCAAAGGCATACTTGATAACTATGTGTTTGTAACTGTGCTTGGTTCCACCTTGGTGTTCCAAATAATTATCATCGAGTTCCTGGGAACATTTGCAAGCACGACCCCTCTGGATATGTCGCAGTGGCTCTTTTGTGTGGCAATTGGATTTATAGGGATGCCAATTGCTGCCATCTTGAAGACTATCCCAGTATAA | 3126 | 43.63 | MERFLEENFGGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVVLEFDKVMWLCKVFFSYLMELVVVSGVQPSDYNVPEEVKAAGFQICADELGSIVEGHDPKKFKHHGGVEGIAGKLCTSTTNGLNSDPDALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLVSRKLREGTHWSWSADDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNRMTVVKSCICMNVKESSNNVSSFCSDLPASLIKLLQQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGDFQAERQAAKLIKVEPFNSEKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVINSSGEVVPLDEASIKHLNVIINQFAGEALRTLCLAYMELENGFSVKDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTLDELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACVTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRLPVGRRGSFISNVMWRNILGQSLYQFCVIWFLQAKGKAMFDLEGPGSDLILNTLIFNSFVFCQIFNEISSREMDKINVFKGILDNYVFVTVLGSTLVFQIIIIEFLGTFASTTPLDMSQWLFCVAIGFIGMPIAAILKTIPV | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 15068526 | 15073718 | + | MC01g0935 | Mch1g1291 | 676183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1291 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 812 | 837 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch1g1291 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 636 | 654 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch1g1291 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 780 | 796 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch1g1291 | 1041 | SMART | Cation_ATPase_N_a_2 | 141 | 217 | IPR004014 | - | |
| Mch1g1291 | 1041 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 486 | 689 | IPR023299 | GO:0000166(InterPro) | |
| Mch1g1291 | 1041 | Gene3D | - | 17 | 77 | - | - | |
| Mch1g1291 | 1041 | FunFam | Calcium-transporting ATPase | 673 | 825 | - | - | |
| Mch1g1291 | 1041 | FunFam | Calcium-transporting ATPase | 797 | 1041 | - | - | |
| Mch1g1291 | 1041 | NCBIfam | HAD-IC family P-type ATPase | 232 | 402 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch1g1291 | 1041 | NCBIfam | HAD-IC family P-type ATPase | 417 | 506 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch1g1291 | 1041 | NCBIfam | HAD-IC family P-type ATPase | 747 | 865 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch1g1291 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 311 | 325 | - | - | |
| Mch1g1291 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 780 | 799 | - | - | |
| Mch1g1291 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 677 | 688 | - | - | |
| Mch1g1291 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 480 | 494 | - | - | |
| Mch1g1291 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 699 | 709 | - | - | |
| Mch1g1291 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 804 | 816 | - | - | |
| Mch1g1291 | 1041 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 138 | 1041 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Mch1g1291 | 1041 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 143 | 1040 | IPR023298 | - | |
| Mch1g1291 | 1041 | SUPERFAMILY | HAD-like | 479 | 885 | IPR036412 | - | |
| Mch1g1291 | 1041 | Pfam | Cation transporter/ATPase, N-terminus | 143 | 212 | IPR004014 | - | |
| Mch1g1291 | 1041 | FunFam | Calcium-transporting ATPase | 490 | 684 | - | - | |
| Mch1g1291 | 1041 | Pfam | Cation transporting ATPase, C-terminus | 865 | 1038 | IPR006068 | - | |
| Mch1g1291 | 1041 | Pfam | Cation transport ATPase (P-type) | 540 | 618 | - | - | |
| Mch1g1291 | 1041 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Mch1g1291 | 1041 | CDD | P-type_ATPase_Ca_PMCA-like | 169 | 913 | - | - | |
| Mch1g1291 | 1041 | Pfam | haloacid dehalogenase-like hydrolase | 665 | 794 | - | - | |
| Mch1g1291 | 1041 | SFLD | Haloacid Dehalogenase | 462 | 832 | - | - | |
| Mch1g1291 | 1041 | FunFam | Calcium-transporting ATPase | 243 | 363 | - | - | |
| Mch1g1291 | 1041 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 50 | IPR024750 | GO:0005516(InterPro) | |
| Mch1g1291 | 1041 | Gene3D | - | 195 | 1038 | - | - | |
| Mch1g1291 | 1041 | SUPERFAMILY | Calcium ATPase, transduction domain A | 266 | 360 | IPR008250 | - | |
| Mch1g1291 | 1041 | SFLD | p-type atpase | 462 | 832 | IPR044492 | - | |
| Mch1g1291 | 1041 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 482 | 488 | IPR018303 | - | |
| Mch1g1291 | 1041 | Pfam | E1-E2 ATPase | 263 | 459 | - | - | |
| Mch1g1291 | 1041 | Gene3D | - | 477 | 825 | IPR023214 | - | |
| Mch1g1291 | 1041 | Gene3D | - | 167 | 363 | - | - | |
| Mch1g1291 | 1041 | PANTHER | CATION TRANSPORTING ATPASE | 113 | 1041 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Mch1g1291 | 1041 | Gene3D | - | 490 | 684 | IPR023299 | GO:0000166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1291 | Mch-Chr1:15068526 | Mch4g1640 | Mch-Chr4:19612194 | 0 | dispersed | |
| Mch1g1291 | Mch-Chr1:15068526 | Mch11g0362 | Mch-Chr11:2235763 | 0 | wgd | |
| Mch1g1291 | Mch-Chr1:15068526 | Mch2g1310 | Mch-Chr2:9270897 | 2.18E-17 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g1291 | K01537 | - | csv:101212315 | 1855.49 |