Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1294 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGGGCCGGAAAATGGCGCACAATACTCACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAATGGAGAAACATAAATGTTACTGCAATTTGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCGTTGGCCCTAAAACATCATGATAATTCTATGGCAGTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGATGCTAAGCCACTTGCAGTTTCAAATGGAACAACTCGTACTAATGGTCCAAAAGAACCACTTGCAAGATTGGACAAACTTATATCAGAGGCCATTAACAACCTAAAGGAGCCAAGGGGTTCTGACAGGGCTGCAATTGCTATGTACATAGAGGAACATTACTGGGCCCCGCCAAACCTTAAAAAACTCCTTTCAACGAAACTAAAGCATATGACTGCAAATGGAAGGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAACTTCAGCCTTATCTGGAAAAAGAAACGTTCCATTATTACTCCTGGAGGGCAAGCAGATGGATTCTTCGAAGGCTGAAAAGGGTGAAGTCAAAATCATTACTAAATTCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCCGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCCGAAAGGGCTGCAAAAGAGGCAGAAGAGGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACGTTCCCTACCAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 927 44.34 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNSMAVSTVLQNEEIVDAKPLAVSNGTTRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGRLIKVKHKYRIAPTSALSGKRNVPLLLLEGKQMDSSKAEKGEVKIITKFQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAKEAEEAEAEAESAQVFAEAAMKALECRTFPTRSPIQKVLLQDNKTLQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15082711 15090220 - MC01g0938 Mch1g1294 676186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1294 308 Gene3D - 116 195 IPR036388 -
Mch1g1294 308 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Mch1g1294 308 Gene3D - 2 59 - -
Mch1g1294 308 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch1g1294 308 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Mch1g1294 308 CDD SANT_TRF 6 57 - -
Mch1g1294 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mch1g1294 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch1g1294 308 FunFam Telomere repeat-binding factor 1 2 58 - -
Mch1g1294 308 FunFam Telomere repeat-binding factor 1 116 196 - -
Mch1g1294 308 Coils Coil 240 277 - -
Mch1g1294 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mch1g1294 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch1g1294 308 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Mch1g1294 308 SMART sant 4 59 IPR001005 -
Mch1g1294 308 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0420 Mch-Chr10:2779645 Mch1g1294 Mch-Chr1:15082711 1.04E-77 dispersed
Mch1g1294 Mch-Chr1:15082711 Mch8g0985 Mch-Chr8:7018546 3.26E-39 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42741 PF00538 Linker_histone 6.70E-11 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1294 K09422 - csv:101202913 477.248