Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1294 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGGGCCGGAAAATGGCGCACAATACTCACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGATAAATGGAGAAACATAAATGTTACTGCAATTTGGGGGTCTAGGCAAAAAGCTAAGCTCGCACTTAAAAAGAATTCGTTGGCCCTAAAACATCATGATAATTCTATGGCAGTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGATGCTAAGCCACTTGCAGTTTCAAATGGAACAACTCGTACTAATGGTCCAAAAGAACCACTTGCAAGATTGGACAAACTTATATCAGAGGCCATTAACAACCTAAAGGAGCCAAGGGGTTCTGACAGGGCTGCAATTGCTATGTACATAGAGGAACATTACTGGGCCCCGCCAAACCTTAAAAAACTCCTTTCAACGAAACTAAAGCATATGACTGCAAATGGAAGGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAACTTCAGCCTTATCTGGAAAAAGAAACGTTCCATTATTACTCCTGGAGGGCAAGCAGATGGATTCTTCGAAGGCTGAAAAGGGTGAAGTCAAAATCATTACTAAATTCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCCGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCCGAAAGGGCTGCAAAAGAGGCAGAAGAGGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACGTTCCCTACCAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 927 44.34 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNSMAVSTVLQNEEIVDAKPLAVSNGTTRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGRLIKVKHKYRIAPTSALSGKRNVPLLLLEGKQMDSSKAEKGEVKIITKFQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAKEAEEAEAEAESAQVFAEAAMKALECRTFPTRSPIQKVLLQDNKTLQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15082711 15090220 - MC01g0938 Mch1g1294 676186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1294 308 Gene3D - 116 195 IPR036388 -
Mch1g1294 308 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Mch1g1294 308 Gene3D - 2 59 - -
Mch1g1294 308 SMART h15plus2 116 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch1g1294 308 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Mch1g1294 308 CDD SANT_TRF 6 57 - -
Mch1g1294 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mch1g1294 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch1g1294 308 FunFam Telomere repeat-binding factor 1 2 58 - -
Mch1g1294 308 FunFam Telomere repeat-binding factor 1 116 196 - -
Mch1g1294 308 Coils Coil 240 277 - -
Mch1g1294 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mch1g1294 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch1g1294 308 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691(InterPro)
Mch1g1294 308 SMART sant 4 59 IPR001005 -
Mch1g1294 308 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1294 K09422 - - csv:101202913 477.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0420 Mch-Chr10:2779645 Mch1g1294 Mch-Chr1:15082711 1.04E-77 dispersed
Mch1g1294 Mch-Chr1:15082711 Mch8g0985 Mch-Chr8:7018546 3.26E-39 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g0420 . 1 313 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 2.8e-73 272.3
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 2.0e-63 239.6
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 1.5e-66 250.0
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 51.0 4.3e-58 221.9
Mch8g0985 . 1 276 Single Myb Histone (SMH) Gene Family AT1G17520 51.9 8.2e-70 260.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42741 PF00538 Linker_histone 6.70E-11 CL0123 Mch TF