Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1314 ATGAATAATGTTAATGGCAACAGCTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAACGTTAACATGGAACTTTCTTCTTCCTCTGCCACTGCTGTTTCCCCTTCAATTCCTGCAAATCTTTTCCACTCCCCATCTCAGTTTAACTACGGCATTTGCTATGGTGTTGATGGAGAAAATGGTGGCTTTTACTCTCCATTGTCTGTCATGCCGCTCAAGTCTGATGGCTCAATTTGTTCAATGGAAGCTCTCACCAGGCAGCATCCACAAGAAGTGGTGAGTAGCTCTACTCCAAAACTTGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGTTATGGCTCTCAGCTTAGACAGCATATTTTGCCATCAAAACCCAACTCATCATGAGCCCCAAACCCAAGCCTTTCCACATTTCTCATCCTTAAGGAGCCGTGAAATGATGGTTCAAGACTCGAAGGTAATCATGCCAGATGGGTGCAATCTGCAGCAGCAGCAGCACCCAACAGTGGCAGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGCTCCAAGAAACTATGGGACTAATAATAGTTCGTTCGAGCAGAAGATGGTGAGCTGCATGAGTGAAAATGGAGGTGAACCTGGCTCCATTAATGCTATGGCTTATGGGGACTTACAGTCATTGAGCTTGTCTATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAGCCACGCAGCACGTCTCCCCTGCCATGGCTGACTGCTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGATGGATCAGAAGCAAATTGTTCACAGGAAGTCTTTGGATACCTTTGGGCAGAGAACCTCACAGTATAGAGGAGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGATAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTATCTTGGAGGCTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAGAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTTGCTCATCTGAGAAGGCAAGCTCATTTTTACCATGTGAGAAGCAGCGGATTCTCGAGGGGGGCCTCAATCTACCGTGGTGTAACAAGGTCTTACAATTCTCTGCTCCCGTTTTTGTTATATTGCAGACACCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAGGCCTATGACATAGCGGCCATAAAATTTCGAGGAATGAATGCTGTTACGAACTTCGACATTACGAGGTATGACGTGGAGAGGATTATCGCAAGCAATACCCTCCTCAGTGGCGATCTTGCTAAGAGAAAGCAGCACACAGAGTTTGATAATGAATCTCTTAGACAAAGCCCTGCTACTCCCAACAGCAACTCAGAGGCTATGCCTTTGCCAACCTCACAGAGTATTCATACTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCCTCTCAGCAGCTCGTTCCAAAACCTCGGTTGTCATCTGGGATAACCAATGATGGGTCACGAATAGGCCTTGAAGACTCGGCCAAATTGGGAGCTCACTTCTCTAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTCGGAATTCCACAATCGACATCGAAGCCATTCGCTGCTGCCCCAGCTAGTAATATGAACTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGAGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGGCTGGAACAATACTTAG 1959 46.61 MNNVNGNSCNWLGFSVSPNVNMELSSSSATAVSPSIPANLFHSPSQFNYGICYGVDGENGGFYSPLSVMPLKSDGSICSMEALTRQHPQEVVSSSTPKLEDFFGGATMGSHHYESNDREVMALSLDSIFCHQNPTHHEPQTQAFPHFSSLRSREMMVQDSKVIMPDGCNLQQQQHPTVAESEISGMKNWAAPRNYGTNNSSFEQKMVSCMSENGGEPGSINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMADCSAMDTKKRGHEKMDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRQAHFYHVRSSGFSRGASIYRGVTRSYNSLLPFLLYCRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQHTEFDNESLRQSPATPNSNSEAMPLPTSQSIHTQSESDWKMALYQSSQQLVPKPRLSSGITNDGSRIGLEDSAKLGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGIPQSTSKPFAAAPASNMNSSWIASAQQLRAANCMSQLPVFAGWNNT 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15217897 15222183 + MC01g0957 Mch1g1314 676206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1314 652 PRINTS Ethylene responsive element binding protein signature 340 360 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 PRINTS Ethylene responsive element binding protein signature 293 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 Gene3D AP2/ERF domain 291 360 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 Gene3D AP2/ERF domain 401 474 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 SUPERFAMILY DNA-binding domain 291 360 IPR016177 GO:0003677(InterPro)
Mch1g1314 652 ProSiteProfiles AP2/ERF domain profile. 401 472 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 MobiDBLite consensus disorder prediction 504 531 - -
Mch1g1314 652 MobiDBLite consensus disorder prediction 498 531 - -
Mch1g1314 652 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 229 541 - -
Mch1g1314 652 SMART rav1_2 292 364 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 SMART rav1_2 401 478 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 Pfam AP2 domain 292 350 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 SUPERFAMILY DNA-binding domain 420 473 IPR016177 GO:0003677(InterPro)
Mch1g1314 652 ProSiteProfiles AP2/ERF domain profile. 292 358 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 FunFam AP2-like ethylene-responsive transcription factor ANT 291 360 - -
Mch1g1314 652 CDD AP2 291 358 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 CDD AP2 400 474 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1314 652 Coils Coil 359 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1314 Mch-Chr1:15217897 Mch8g1031 Mch-Chr8:7280075 9.44E-112 dispersed
Mch1g1314 Mch-Chr1:15217897 Mch11g0385 Mch-Chr11:2405751 1.11E-155 wgd
Mch1g1314 Mch-Chr1:15217897 Mch8g0606 Mch-Chr8:4348038 3.55E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42745 PF00847 AP2 1.20E-13 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1314 K09285 - csv:101203323 1102.81