Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1325 ATGGGTTTTGACGATCTCTCTAATACAGGGCTTCTCTTGGGTTTGGGATTAACGCTTCCCTCTAAGCCGTCTCCGCCTGATAATCTTTCTCAAACGCCCAAGAAATCAGTAGCTCTGTTCACTTTCTCCCCTTCCGCCGCTAATTCCGAGCCGTCTTTAACTTTGGGCCTTTCCTCCGACGCTTACCTCAACCTGCAGGCCGCCGCTGATGCGGTTGATTTGTGTCGCCAGCCCTCGCCCCACAGCGCGGTTTCTTCATTCTCCAGCGGCGGCAGAGTGAAGCGCGAGAGAGACGTTTCCGGTGAAGATATTGAGGAAGAGAAAGCTTCTTCTCGAGTCAGTGATGAAGATGAAGATGGCTCTAATGCTAGGAAAAAACTTAGGCTAACCAAACAACAATCTGCCCTCTTGGAGGAGAGCTTCAAACTTCACAGCACTCTCAACCCTAAGCAAAAACAAGCTTTGGCCAGGGAGTTAAATCTGCGGCCGAGACAAGTTGAAGTTTGGTTCCAGAACAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTCCTAAAGAGATGCTGCGAGACACTAACAGACGAAAACAGGAGACTGCAGAAAGAGCTGCAGGAATTGAAAGCCCTGAAACTCGCACAGCCTCTGTTTATGCAAATGCCGGCGGCGACACTCACCATGTGCCCGTCGTGCGAGCGGATCGGCGGCGGAGTAAACGGCGACGGCAGTTCCAAGGGCCCATTTTCGATGGCTCCCAAGCCCCGGCTTTACAAAGCCTTCACCAATCCCTCTGCGGCTTGCTAA 813 52.03 MGFDDLSNTGLLLGLGLTLPSKPSPPDNLSQTPKKSVALFTFSPSAANSEPSLTLGLSSDAYLNLQAAADAVDLCRQPSPHSAVSSFSSGGRVKRERDVSGEDIEEEKASSRVSDEDEDGSNARKKLRLTKQQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGVNGDGSSKGPFSMAPKPRLYKAFTNPSAAC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15326825 15328620 + MC01g0966 Mch1g1325 676217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1325 270 Gene3D - 117 185 - -
Mch1g1325 270 SMART halz 180 223 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1325 270 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch1g1325 270 Pfam Homeodomain 124 178 IPR001356 GO:0003677(InterPro)
Mch1g1325 270 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677(InterPro)
Mch1g1325 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 241 IPR050762 -
Mch1g1325 270 Coils Coil 186 216 - -
Mch1g1325 270 SMART HOX_1 122 184 IPR001356 GO:0003677(InterPro)
Mch1g1325 270 MobiDBLite consensus disorder prediction 78 127 - -
Mch1g1325 270 Pfam Homeobox associated leucine zipper 180 214 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1325 270 MobiDBLite consensus disorder prediction 91 126 - -
Mch1g1325 270 SUPERFAMILY Homeodomain-like 114 181 IPR009057 -
Mch1g1325 270 FunFam Homeobox-leucine zipper protein 18 109 185 - -
Mch1g1325 270 CDD homeodomain 124 181 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1325 Mch-Chr1:15326825 Mch5g1450 Mch-Chr5:15582998 2.45E-71 dispersed
Mch1g1325 Mch-Chr1:15326825 Mch10g0637 Mch-Chr10:4355527 5.10E-114 wgd
Mch1g1325 Mch-Chr1:15326825 Mch11g0393 Mch-Chr11:2477892 1.43E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42747 PF00046 Homeodomain 9.00E-16 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1325 K09338 - csv:101218782 380.948