Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1334 GAATACCAAGCCCTTCTCAACCTCAGAACCTCCATTACCGCCGACCCCAAATCCTCCCTCTCCTCCTGGAACGCCTCCACCGCCCACTGTTCTTGGTTTGGGGTTACTTGCGATTTTCGCCGCCACGTCACTGCCCTCGACCTCTCCGGCCTCAGCCTCGCCGGTTCTCTTTCCCCTGATGTTGCCCACCTTCGCTTCCTCGCTAATCTCTCCCTCGCTCTCAACGACTTCTCCGGTCCTATCCCGCCGGAGATTTCTTCAATCTCTACTCTCCGCTACCTCAATCTGTCGAATAATGTGTTCGATGGGTCCTTCCCTTCGCGGCTTTCGCAGCTACAGAATCTGCAGGTTCTTGACTTGTATAACAACAATATGACCGGGGATTTCCCCATTGTGGTCACCGAAATGTTGAGCCTCCGCCATTTGCACCTTGGGGGGAATTTCTTCGCCGGCCGGATCCCGCCCGAGGTCGGTCGGATGGAGGCCTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGTGGCCCAATACCGCCTGAGATCGGAAACTTGACGAACCTTCGGGAGCTCTACATTGGCTACTTCAACGCCTACGACGGCGGTATTCCGGCTGAGATTGGGAACTTGTCGGACTTGAAATCTTTGGATTTGTCGAACAATGTGCTTGTGGGCGAGATTCCTGATTCATTCGCCGAGCTCAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTCCACGGGGCGATTCCCTCATTTATTGGCGACTTGCCAAAACTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAATCGATTCCACAGAACCTGGGCAAAAACGGAATGCTTCAGATTTTGGATCTTTCTTCGAACAAGCTCACCGGAACTCTTCCTCCGGATATGTGCTACGGTAATCGGCTTCAGACTTTAATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAATCGCTAGGCAAATGCGTTTCGCTTAATCGCATTCGTATGGGGGAGAATTTTCTCAATGGATCCATTCCAAAGGGCCTTCTGAGTCTGCCGAAGCTCTCTCAGGTCGAATTACAGGACAATTTCCTCTCCGGAGAGTTCCCAATAACCGACTCTATCTCAGTAAATCTCGGCCAAATCAGTCTCTCCAACAACCGCCTCTCCGGGTCGATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTCCTCGACGGAAACAAATTCTCCGGTCAAATCCCACCCGAAATTGGGAGGTTACAGCAGCTTTCGAAGATCGATTTCAGCAACAACAAGCTGTCGGGTTCAATCGCACCGGAGATTAGCCAATGCAAGCTTCTGACCTTCGTCGATCTCAGCCGAAACGAGCTCTCAGGAGACATCCCAAACGAAATCACCAGTATGAGGATATTGAATTACCTTAACCTCTCAAAAAACCACTTAATCGGCGGAATCCCTGCTTCCATAGCCAGGGGATTGAAGAGCCTGACCTCTGTGGATTTATCGTGCAATATGCTTGTTGGGGAAATACCCGCCTCTTTCGCGGAGTTCAAGAGCTTGAAGCTATTGAACCTTTTCCAGAACAAGCTCTCCGGAGCGATTCCGGGATTCATCGGCGACCTGCCGGAGCTGGAGACATTGCAGTTGTGGAGTAACAATTTTACAGAGTCCGTCCCTCAGAATTTGGGGAAGGGCGGAATGCTTCGGACTGTTGATCTTGCTTTTAACCAATTGACTGGTACGATTCCTCCTGAAATTTGCCATGGGAATCGGCTTGAAATCTTCATCGCCATGGGCAATTCCTTGTCTGGCTCGATCCCAGAGTCGTTGGGAAATTGCATTTCACTAAGGCGTATACTTCTATGGGGCAACGCTCTCAATGGATCAATTCCAAAACGGCTCTTGGGTTTGCCAAATCTCTCTCAGGTTGATTTGCACGACAATTTTCTCTCCGGAGAATTTCCCATGACCAGTTCGATCTCAGTAAATCTTCTTCAGATTAGTTTATCGAACAATAAGCTCTCTGGATCGTTGCCACCCTCTGTCGGCAGCTTTTTGGCCGTCCAGAAGCTACTTCTTGACCGGAATAAGTTTTCCGGCCAGATTCCTTCCGAGATTGGGAGATTACAGCAACTATCTCGGATAGATTTCAGCCAGAATAAACTCTCTGGTCCAATTGTGCCGCAGATAAGTGGATGCAATCACTTGATCTTCCTTGATCTCAGTGGAAATGAGCTTTCCGGTGAAATTCCGAACAATATTACCAACATGAAATTATTGACCTATTTGAATCTCTCAAGAAACCATTTAGTTGGGTCCATTCCTGCTTCAATGGTTAATATGCAGAGCTTAACCTCTGTGGACTTTTCATATAACAATCTCTCTGGTTTGGTTATGGGAAATGGGCAATTTGGTTACTTCAACTACACATCATTTCTAGGCAACCCTTATCTCTGTGGCCCATATTTGGGGACTTGCAAAGATGGTGTTGCCGCTAGCAACCATAAGAACTCTGCTTCGCTCAAGCTCCTACTAGGTGTTGGATTGTTTTTGTGCTTTATTGCAGTGACAGTTGTTGTAATCTTCAAAGTTCGATCGTTAAAGAGCGCAGCGAGGGAGTTTCGAGGATGGAAACTAACAGCCTTCCAACGGTTGGATTTCTCAGTAAACGAGGTCTTAAACTGCCTTAAGGAGGAAAATGTTATTGCAATAGGAGGTTATGGTACTGTATATAAAGGAGTGATGCTAAATGGTGATCAAGTCACCGTGAAAAGACTTCCTATTCTTAAGATGAGCAGTGGGAGTTCTGATGGTCATGGGTTCGACGCCGAGATACAAGCTCTTGGGAGGATTCGACACCGTCACATCCTTAGATTATTGGGTGTCTGTTCTAACCATGAAACGAATCTTTTGGTCTATGAGTACATGCCTAACGGGAGCCTCTATGAAGTTCTCCATGGCAATAAAGGAGGTCACTTACTCTGGGATACAAGGTACAAGATAGCCAAGGAGACTGCGGAAGGACTTTGCTATCTTCACCACCACTGCTCGCCGCCAATTGTTCATCGAGACGTGAAGTCGAACAACATTATGCTAGATACCAATTTTGATGCTCAGCTTGCCAATTCCGGGCTTGTGAAGTTCTTACAAGTTTCAGGCTCATCGGATAGGTTAGCTCTTGATTCATCCATATGTACTGCACCAGAGCATGTCCACAAGCAGAACGCGGACGAGAAGTGGGATGTCTATAGCTTTGGAGTTGTCCTCTTGGAGCTAGTTAGCGGTAGGAAAGCAATCGGAGTACTTAACAATGGAATCGACATAGTTCAATGGGTTAGAAAAATGAGAGACTCAGAGAAGGAAGGAATACACAAAATTGTCGACCAAAGACTCTCCTCCGTCCCTCTCGAAGAAGTGATGCACGTACTCAATGTTGCCATACTGTGCACTGAAGAAGAGGCTGCAAAGCGTCCCACGATGCTGGAAGTCGTTCGAATCCTTACGGAGCATCAGCAGCAATCATTCTCAAACCAGGAAAGAGATACTTAA 3564 47.56 EYQALLNLRTSITADPKSSLSSWNASTAHCSWFGVTCDFRRHVTALDLSGLSLAGSLSPDVAHLRFLANLSLALNDFSGPIPPEISSISTLRYLNLSNNVFDGSFPSRLSQLQNLQVLDLYNNNMTGDFPIVVTEMLSLRHLHLGGNFFAGRIPPEVGRMEALEYLAVSGNELSGPIPPEIGNLTNLRELYIGYFNAYDGGIPAEIGNLSDLKSLDLSNNVLVGEIPDSFAELKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTESIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISVNLGQISLSNNRLSGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGSIAPEISQCKLLTFVDLSRNELSGDIPNEITSMRILNYLNLSKNHLIGGIPASIARGLKSLTSVDLSCNMLVGEIPASFAEFKSLKLLNLFQNKLSGAIPGFIGDLPELETLQLWSNNFTESVPQNLGKGGMLRTVDLAFNQLTGTIPPEICHGNRLEIFIAMGNSLSGSIPESLGNCISLRRILLWGNALNGSIPKRLLGLPNLSQVDLHDNFLSGEFPMTSSISVNLLQISLSNNKLSGSLPPSVGSFLAVQKLLLDRNKFSGQIPSEIGRLQQLSRIDFSQNKLSGPIVPQISGCNHLIFLDLSGNELSGEIPNNITNMKLLTYLNLSRNHLVGSIPASMVNMQSLTSVDFSYNNLSGLVMGNGQFGYFNYTSFLGNPYLCGPYLGTCKDGVAASNHKNSASLKLLLGVGLFLCFIAVTVVVIFKVRSLKSAAREFRGWKLTAFQRLDFSVNEVLNCLKEENVIAIGGYGTVYKGVMLNGDQVTVKRLPILKMSSGSSDGHGFDAEIQALGRIRHRHILRLLGVCSNHETNLLVYEYMPNGSLYEVLHGNKGGHLLWDTRYKIAKETAEGLCYLHHHCSPPIVHRDVKSNNIMLDTNFDAQLANSGLVKFLQVSGSSDRLALDSSICTAPEHVHKQNADEKWDVYSFGVVLLELVSGRKAIGVLNNGIDIVQWVRKMRDSEKEGIHKIVDQRLSSVPLEEVMHVLNVAILCTEEEAAKRPTMLEVVRILTEHQQQSFSNQERDT 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15371501 15388752 - MC01g0974 Mch1g1334 676226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1334 1187 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 981 1180 - -
Mch1g1334 1187 FunFam Leucine-rich receptor-like protein kinase family protein 154 250 - -
Mch1g1334 1187 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 1 153 - -
Mch1g1334 1187 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 376 1175 IPR050647 -
Mch1g1334 1187 Gene3D Ribonuclease Inhibitor 257 542 IPR032675 -
Mch1g1334 1187 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 261 519 - -
Mch1g1334 1187 SUPERFAMILY L domain-like 414 809 - -
Mch1g1334 1187 Pfam Leucine rich repeat N-terminal domain 1 38 IPR013210 -
Mch1g1334 1187 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine rich repeat 208 246 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Gene3D Ribonuclease Inhibitor 197 256 IPR032675 -
Mch1g1334 1187 Gene3D Ribonuclease Inhibitor 1 111 IPR032675 -
Mch1g1334 1187 SMART serkin_6 901 1171 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1334 1187 Gene3D Phosphorylase Kinase; domain 1 867 980 - -
Mch1g1334 1187 SMART LRR_typ_2 282 305 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 762 786 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 257 281 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 546 570 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 136 160 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 209 232 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 498 521 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 425 449 IPR003591 -
Mch1g1334 1187 SMART LRR_typ_2 571 594 IPR003591 -
Mch1g1334 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1025 1037 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1334 1187 Gene3D Ribonuclease Inhibitor 543 835 IPR032675 -
Mch1g1334 1187 SUPERFAMILY Protein kinase-like (PK-like) 894 1172 IPR011009 -
Mch1g1334 1187 SUPERFAMILY L domain-like 24 368 - -
Mch1g1334 1187 ProSiteProfiles Protein kinase domain profile. 901 1180 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g1334 1187 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 869 980 - -
Mch1g1334 1187 Pfam Protein tyrosine and serine/threonine kinase 903 1171 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g1334 1187 Gene3D Ribonuclease Inhibitor 112 196 IPR032675 -
Mch1g1334 1187 Gene3D Transferase(Phosphotransferase) domain 1 981 1187 - -
Mch1g1334 1187 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 668 689 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 740 762 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 114 131 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 428 449 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 284 303 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 765 785 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 573 593 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 405 425 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 452 473 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 379 401 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 Pfam Leucine Rich Repeat 91 112 IPR001611 GO:0005515(InterPro)
Mch1g1334 1187 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 550 835 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1334 Mch-Chr1:15371501 Mch4g0284 Mch-Chr4:1818025 1.60E-73 dispersed
Mch10g0571 Mch-Chr10:3796896 Mch1g1334 Mch-Chr1:15371501 9.30E-101 transposed
Mch11g0105 Mch-Chr11:701294 Mch1g1334 Mch-Chr1:15371501 8.70E-104 transposed
Mch1g2183 Mch-Chr1:20940614 Mch1g1334 Mch-Chr1:15371501 2.97E-31 transposed
Mch1g1334 Mch-Chr1:15371501 Mch10g0626 Mch-Chr10:4259756 2.07E-56 wgd
Mch1g1334 Mch-Chr1:15371501 Mch11g0743 Mch-Chr11:5014068 1.46E-55 wgd
Mch1g1334 Mch-Chr1:15371501 Mch2g1375 Mch-Chr2:9914348 4.21E-33 wgd
Mch1g1334 Mch-Chr1:15371501 Mch8g0305 Mch-Chr8:2136812 5.08E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77134 PF07714 PK_Tyr_Ser-Thr 7.30E-37 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1334 - - - 0.0