Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1351 ATGGAGCTCAGTCAACATGGTTTCTTGGAGGAATTGTTAGCTTCCACTCCTTGGACCTCCCACTCAAATGGGTTCAACGATTTCTTCCAAAATGGCTGGAATTTCAATTCTTCTTTTGATGAGAATCCCGCCATGGGTACCCCAAATTTCCCCCATTTTCCTGGCATTCAAACCACGCCAAATGATTTTCCTTTCGGCGACCAACTCCTCTACACTAATTTCCTCGAAGGGTTTGCAATGCCGGAGCTGGATTCCTCCTCCTACACCAAGAACAACGAAACCCCACCATTTGTTTCGCAGGAAGAAATTATGAGTAATAAAACGCCTCCGGCGGCGGTGGAGGAGGAAGAAGTTGGTTTTCTGGAGAGCAAAGTGGAAATGGAGCAAATGGTTGGCCCTGAAGCTCCTGCTTTTAAAATGGGTGTGCCAGAATTGGGGAAGAGAAGCAGCAATAAGGCCAAGAAAATTGAAGGCCAGCCCTCCAAGAATTTAATGGCCGAAAGAAGGAGGAGGAAGCGATTGAACGATCGCCTTTCAATGCTTAGAGCAATTGTCCCTAAAATAAGCAAGATGGACAGAACATCTATTCTTGGAGACACAATCGATTACGTGAAAGAACTACTTGAAAGAATCAATAACTTGAAGGAAGAAGAAGAGGTTGGTGTAGATTCAAACCACCGGAGCTTAAATGGGATCTCCAAGGAACCCAAGCCCAGTGAAGTTCTAGTGAGAAATTCCCCCAAGGTGGGGTTTTACTGTTGTTGTTTTTACTGTTTGATTTTTTTTCTTTTAACTCTGCTATTGCTAATGGTTGAAGTTTGGTTTTTTTTTTTTTTTTTTTTCCAGTTCGATGTTGAAAAGAGGGAAAGGGAGACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCCACTGTCAATACATTGGAAGCTTTGGGCCTTGAGATTCATCAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGCTCTGAGGGAAGTGCCCAGAAAGCAGTGGCAAGTTCTGAAGATGTAAAGGAAGCATTGTTCAGAAATGCAGGATATGGAGGGAATTGCTTGTAG 1101 43.51 MELSQHGFLEELLASTPWTSHSNGFNDFFQNGWNFNSSFDENPAMGTPNFPHFPGIQTTPNDFPFGDQLLYTNFLEGFAMPELDSSSYTKNNETPPFVSQEEIMSNKTPPAAVEEEEVGFLESKVEMEQMVGPEAPAFKMGVPELGKRSSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEEEVGVDSNHRSLNGISKEPKPSEVLVRNSPKVGFYCCCFYCLIFFLLTLLLLMVEVWFFFFFFFQFDVEKRERETRIDICCATRPGLLLSTVNTLEALGLEIHQCVISCFNDFSMQASCSEGSAQKAVASSEDVKEALFRNAGYGGNCL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15515638 15520425 - MC01g0989 Mch1g1351 676243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1351 366 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 118 361 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch1g1351 366 MobiDBLite consensus disorder prediction 148 169 - -
Mch1g1351 366 Coils Coil 197 217 - -
Mch1g1351 366 MobiDBLite consensus disorder prediction 139 169 - -
Mch1g1351 366 CDD ACT_UUR-ACR-like 292 333 - -
Mch1g1351 366 Gene3D - 149 221 IPR036638 GO:0046983(InterPro)
Mch1g1351 366 Pfam Plant bHLH transcription factor, ACT-like domain 285 355 IPR054502 -
Mch1g1351 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983(InterPro)
Mch1g1351 366 SMART finulus 164 213 IPR011598 GO:0046983(InterPro)
Mch1g1351 366 Pfam Helix-loop-helix DNA-binding domain 165 207 IPR011598 GO:0046983(InterPro)
Mch1g1351 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 220 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1351 Mch-Chr1:15515638 Mch3g1317 Mch-Chr3:15969686 1.68E-32 dispersed
Mch10g0641 Mch-Chr10:4392563 Mch1g1351 Mch-Chr1:15515638 2.77E-06 transposed
Mch7g0827 Mch-Chr7:12860085 Mch1g1351 Mch-Chr1:15515638 1.32E-09 transposed
Mch1g1351 Mch-Chr1:15515638 Mch10g0624 Mch-Chr10:4248787 3.82E-08 wgd
Mch1g1351 Mch-Chr1:15515638 Mch11g0736 Mch-Chr11:4943886 6.10E-70 wgd
Mch1g1351 Mch-Chr1:15515638 Mch8g0296 Mch-Chr8:2051861 8.98E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42751 PF00010 HLH 2.10E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1351 - - - 0.0