Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1360 ATGGGTCGGGGGAAGATTGTGATAAGAAGGATCGATAATTCTGCCAGCAGGCAAGTGACTTTCTCCAAGAGAAGAAAAGGGTTGCTTAAAAAGGCTAAAGAGCTCGCAATTCTCTGCGATGCAGAAATTGGACTCATCATTTTTTCCAGCTCTGGGAAGCACTATGAGTTCGCAAGCACCAGCATAGAGTCAATAATTGAGAAATATAATAGAAGAAAGGAGGAAGATGAACTGCTGTTGAATCCAGCTTCAGATCTCAAGTTATGGCAGAAGGAAGTAGCAATTCTAAGGCAGCAACTACTCAACTTGGAAGAGAATAATCGGAAATTAATGGGAGAGCAACTCTATGGTTTATCAGTCAAAGACCTAAATAGCCTTGAGAATCAACTGGAGTTTAGTTTACAAAGCATCCGAATAAAAAAGGAACAAATATTAAATGATGAAATAAAAGAATTGAACAGAAAGGGAATTCTGATGCACCAAGAAAATATAGAGCTAAGTAAGAAAGTCAACTTTTTTTGTCAGGAGAACATGGAATTGCATAGAAAGATTTATGGACATGACTCGAGAGATCAGATGACCGTAGCCTGTGAAAACGCCTTGATTCCATATGGGATCATCAGCGGCACCGGCGTGGCCACTGTCCCAGCCAGCAGCAACGCCCTGCGTGTGCCGATCCATCTCGAGCTCAGCCGGCCAGAGCAACAGAACTTAATTAACTAA 723 41.91 MGRGKIVIRRIDNSASRQVTFSKRRKGLLKKAKELAILCDAEIGLIIFSSSGKHYEFASTSIESIIEKYNRRKEEDELLLNPASDLKLWQKEVAILRQQLLNLEENNRKLMGEQLYGLSVKDLNSLENQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQENIELSKKVNFFCQENMELHRKIYGHDSRDQMTVACENALIPYGIISGTGVATVPASSNALRVPIHLELSRPEQQNLIN 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15559663 15562539 - MC01g0996 Mch1g1360 676252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1360 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch1g1360 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch1g1360 240 Gene3D - 13 87 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 Coils Coil 123 143 - -
Mch1g1360 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch1g1360 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch1g1360 240 Coils Coil 86 113 - -
Mch1g1360 240 Pfam K-box region 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1360 Mch-Chr1:15559663 Mch1g1976 Mch-Chr1:19399983 1.12E-41 dispersed
Mch1g1360 Mch-Chr1:15559663 Mch11g0724 Mch-Chr11:4832939 1.59E-70 wgd
Mch1g1360 Mch-Chr1:15559663 Mch8g0275 Mch-Chr8:1878009 1.32E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42752 PF01486 K-box 3.20E-22 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1360 K09264 - csv:101206453 371.318