Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1361 CAGGTGATACTAAATAACGGCATAGTTCAAGTCATTTTGTCGAGTCCACAAGGGGATGTCGTTGGCATAAAATACAATGGTATCGACAATTTACTTGAAATTCACAATGCAGTTTATAACCGAGGGTATTGGGACGTAGTTTGGAACAGGCCAAATGAAGACACTTCCATTGATAGATTAAGAGCTACAAATTTCAAGGTGATTACGGCCAGCAGTGACCAAGTAGAGGTTTCATTCACCAAAACTTGGAATCCTTCAGCCCCCGACTCTTCCTCAGTCCCCTTGAACATCGACAAGAGGTATATTCTGCGGCGCGGCGTCTCCGGATTGTATGCATATGGCATATTTGAACGCCTGAATGGGTGGCCTCAGATTGATATCGATCAGATCAGAATCGTCTACAAACTTCAGAGGGACAAATTCGATTACATGGCGATATCGGACAATAGGCAGAGAATCATGCCAAAGCCCGAGGACCGCGCAACCGGCCGGCCTCTGGCTTATCCCGAGGCGGTTCTCTTAACCCATCCCACCAATAAACACCTCAAAGGAGAGGTGGACGATAAGTACCAGTACTCGATTGAGAATCAGGAGAACAAGGTCCATGGATGGGTGTCGGGGGACCCACCCACGGGGTTTTGGATGATCACGCCCAGTGATGAGTTCCGCACGGCGGGGCCCACCAAGCAAGGTCTCACTTCCCACGTCGGCCCCACCACCCTCTCCATGTTCGTGAGTACGCATTACACGGGTAAGGAAGCGGGGATGAAATTTGAGGAGGGAGAGGCATGGAAGAAGGTTTTCGGACCGGTTTTGGTTTATTTGAACTCGGTTCCGACCGTCACTGGAACTCCAGGTTCACTCTGGGAAGATGCTAAAAGACAGATGGGGGTGGAAGTGAGTAGCTGGCCATACGGGTTTGTAGGATCCGGAGATTATCCAACGGCCGACCAACGAGGAAGCGTGACCGGTCAATTACTAGTCCGAGATCGATACGCGAGAATAAGAGATACGTGGGCCGAGTCTGCGTATGTGGGCCTGGCTGCTCCTGGAGAGTTGGGGTCCTGGCAAAGAGAAAGCAAGGGGTATCAGTTCTGGACACGAGCCGACTGGAGGGGCTATTTCTCCATTAAAAACATAAGGCCTGGAAACTACAATCTATACGCATGGGTACCCGGCGTAATCGGCGATTACAAGTACGGTGTCAATGTAACCGTCACGGCGGCGAGTAACACCAGCCTAGGTTTGCTGGTGTACAGACCTCCGAGACGGGGGCCCACTCTATGGGAAATAGGCGTCCCAGATCGGTCGGCGGCGGAGTTTTACGTGCCGGACCCTGAGCCCACCCTCGCGAACCTCTTATACAACAACCGGATGATTCGGAGCCCAGATAAGTTCCGACAGTACGGGCTGTGGGAGCGCTACGCGGATTTGTACCCGGATCGAGATCTGGTCTACACCGTCGGTACGGACGACTACCGCTGCCACTGGTTCTTCGCCCACGTGACCAGAGCCACCGGAACAGGGGCCTACGACTACGAGCCAACCACGTGGCAGATAGTGTTTCCGCTAAAAGGGCCAAAACAGACCGGGAACTACACGCTCCGGTTGGCCATAGCCTCCGCGACGGAGTCTGTGGTGAAAGTCCGGTTCAACAACCCGACGGTGGAACCGGCCCATTTCTCAACGGGGCCGTGGTCGATTGGGAAGGATAACGCGATCGCAAGGCATGGCATTCACGGGCTTTACTGGCTATTCAGCTTCGATGTTCCCAGTGAATATTTGGTTGAGGACAAAAATAATGTAATCTATCTGACGCAGTCAAGATCCAAGGGGCCTTTCCGAGGAGTAATGTACGACTACCTACGACTTGAAGGTGTAGTGTGA 1887 52.57 QVILNNGIVQVILSSPQGDVVGIKYNGIDNLLEIHNAVYNRGYWDVVWNRPNEDTSIDRLRATNFKVITASSDQVEVSFTKTWNPSAPDSSSVPLNIDKRYILRRGVSGLYAYGIFERLNGWPQIDIDQIRIVYKLQRDKFDYMAISDNRQRIMPKPEDRATGRPLAYPEAVLLTHPTNKHLKGEVDDKYQYSIENQENKVHGWVSGDPPTGFWMITPSDEFRTAGPTKQGLTSHVGPTTLSMFVSTHYTGKEAGMKFEEGEAWKKVFGPVLVYLNSVPTVTGTPGSLWEDAKRQMGVEVSSWPYGFVGSGDYPTADQRGSVTGQLLVRDRYARIRDTWAESAYVGLAAPGELGSWQRESKGYQFWTRADWRGYFSIKNIRPGNYNLYAWVPGVIGDYKYGVNVTVTAASNTSLGLLVYRPPRRGPTLWEIGVPDRSAAEFYVPDPEPTLANLLYNNRMIRSPDKFRQYGLWERYADLYPDRDLVYTVGTDDYRCHWFFAHVTRATGTGAYDYEPTTWQIVFPLKGPKQTGNYTLRLAIASATESVVKVRFNNPTVEPAHFSTGPWSIGKDNAIARHGIHGLYWLFSFDVPSEYLVEDKNNVIYLTQSRSKGPFRGVMYDYLRLEGVV 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15568781 15573702 + MC01g0997 Mch1g1361 676253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1361 628 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 626 IPR051850 -
Mch1g1361 628 SUPERFAMILY Starch-binding domain-like 314 417 IPR013784 GO:0030246(InterPro)
Mch1g1361 628 CDD RGL4_C 429 625 - -
Mch1g1361 628 CDD RGL4_N 1 288 - -
Mch1g1361 628 Gene3D - 425 625 - -
Mch1g1361 628 Gene3D - 315 416 - -
Mch1g1361 628 Pfam Rhamnogalacturonate lyase family 2 186 IPR010325 -
Mch1g1361 628 Pfam Polysaccharide lyase family 4, domain II 341 413 IPR029413 -
Mch1g1361 628 CDD RGL4_M 318 415 IPR029413 -
Mch1g1361 628 SUPERFAMILY Galactose mutarotase-like 8 277 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Mch1g1361 628 SUPERFAMILY Galactose-binding domain-like 425 625 IPR008979 -
Mch1g1361 628 Pfam Polysaccharide lyase family 4, domain III 427 624 IPR029411 -
Mch1g1361 628 FunFam Rhamnogalacturonate lyase B 315 414 - -
Mch1g1361 628 Gene3D - 1 278 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1361 Mch-Chr1:15568781 Mch1g1747 Mch-Chr1:17975037 1.11E-217 dispersed
Mch1g1361 Mch-Chr1:15568781 Mch10g0620 Mch-Chr10:4211984 8.64E-290 wgd
Mch1g1361 Mch-Chr1:15568781 Mch11g0720 Mch-Chr11:4797070 5.98E-256 wgd
Mch1g1361 Mch-Chr1:15568781 Mch8g0257 Mch-Chr8:1723657 5.37E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1361 K18195 - csv:101206696 939.488