Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1365 ATGGGAACTCAAAGTCAAACAGGATTAATAGTACAAAACAAGATGCTTCCTCCTCAATCTGGAAGATTTCAAGATCGTGAAGATCTCATTAAATATGTTCGTGATTTTGGTGCTGATCAGGGATATGTGGTAACGATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTCGGTTGTGATAGAGGGGGTGTGTACCGAAACAGGCGTAAGATTGATGAGAGTCGACGCAAAAGGAAAGCTAGCTCACGCTTGATAAATTGTCCGTTTGAAGCAATTGGTAAGAAGGAAGATGATGTCTGGATGCTTACCATTAAAAATGAGGACCATAACCATGAGCCCTTAAAAGACATGTCAGAGCATCCTTATAGTCGCCGTTTCACTGAGGATGAGGTAAAGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAGCAACATAATCCAGATCTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCTAAAATTCGTCAAGGAAACCTATCAGAAAAAAATTTCAAGTCATGGCGACCTAATATCTCAGTTCCTGCTAATAGTAGTGATACTGTCATTGGGAATACAGCCAAGCAAAACCTTCAGCCGAAAGTTCCTAATTTTATTGGAGGAGAATTTTTGGATTCGCGCAACTGTTCAATGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCAAGTACCTTTAACAACCTATGAAGAGTTTAAGGCTGCAGTTAATGCAGCAAAACAAGCTTTTCCCTCCTGGAAAAATACACCTATTTCTGCTCGTCAACGTATTATGTTCAAGTTCCAGGAGCTCATCCTCAGAGACATGGATAAGCTTGTGACGAATATTGTCACAGAACAGGGCAAAACATTAAAGGGTGCTCAAGATGATATCCTCTGTGGTTTAGAGGTGGTCAAACATGCTTGTGGATTGGCCGCTATGCAAATGGGGAAGTTCGTCCCTAATGCATCTGATGGAATTGATTCCTACTGCATCCGAGAACCACTAGGTGTTTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAATTTCCTTATGGATGTTTCCGATTGCAGTTACATGTGGCAATACATTTGTCCTTAAGCCATGTGAAAAGCACCCGGGGGCTTCAATGCTACTAGCTGCATTAGCAGTGGAGGCTGGTTTGCCCGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATTGATTCTATATGTGATGATGAGGACATAAAAGTCATATCCTTTGCCAGTTCAAGTACAGCTGGAAAGAATATACATGCGAGGGCAACTGCCACTGGAAAACAAGTTCAGTCCAATTTAGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTGATATGGGGGCTAGTTTTAGTGCTGTTGTTGGTGCTGGATTTGGTACTGCGGGACAGACATGTATGACTCTCAACATTGTTGTCTCCGTTGGAAGTTCAATTCTATGGGAAGAAAAACTTGTGGAATGTGCGAAAGCACTTGAAGTGAATGTGGGGACAGATCCCAATGCTGACCTTGGTCCTGTAGTTACCAAAGAGGTGAAAGATCGTTTATGTAGATTAGTTCAAAGTTCCATTGAAGGTGGTGCTAGACTCCTGCTTGATGGTAGAAACATTGTGGTGCCGGGATATGAAAATGGAAACTTTTTTGGTCCTACTATTCTATCCGATGTAACAACCGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCGGAGAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATTTTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGAAGTGGAAGTGGGAATGGTTGGTATCAATGTTGCTGTTCCAGTTCCATTGCCATCTTCCTTTAATGGTTTGAACTCATCTTTTGCTGTAGATCTAGTTTTTTTCGACCTGGAATTTTACACCAAGTTGAAAAGAGTGGCTCAACAGTGGAAGAACCTACCAAGTATTGGAGTCTCAATGGCAACGCCTTCCCCATCTGAGAGAGATTTGAGAGCTCGTGCTGTACCTCCAGTGTTGGCTTCAATGTGTGAGAAGGATTCACCTGGTGGGCACGGAAGTTTACCTCCGCTGCCAAACCCTCGAATATCTCAGACAGATTTAACCATTGAAAGAGCCGCCTCATCTCCGCCAACTCCTGACAGGGATTTACATGGTCCAGGACTCTCCCTGATTTCAACTTTATCATCAGAGGGGGATGTATCCAACCAAGATCTGTCCCCTGCTATGCCTTCAGCAGCTGATAGCAATTTACCTGGCCAAGCTATGTCAATGGCTACATCCCGATCATCCGAGAGACTGTACATACCTCAGAAATCTCATTGGAATGAAACCCAGAGAGCTGATTCAATTCCACCCAGTTCCGAGCAGATCCATGGGCCCTCATCACATACAAACAGCATTAAAGCACAGGCATCTCGATCGACTCACCCTGCTTTGGTCTTAGCTGCAGAGGGTTTATACGTGCCTACATCTCATGACAGTATTTGCCTGATAACCCATGGAAGTGATAGCACAGTTCCATCTCGAAGAATCGGCAGCATCTGTCAACCATCGGAACGAGTATACATGCTAGCAACTTCCCATCTGAACGACAGTATGAGTCAAACATTGCAGAGAACTGATGCCTCCATGTTTTCTTCTTCTGAGAGGCATTATGTGCCTCCCACTTCTCATAAAAATGACCACATCAGCTTGGCCTCTCATACCGAGGTTGCTTTGCAATCAACTTCAGATAGGATATACTTGTCTAGCTTGACCGAGAGGGAAGATAATATGGCTTCCGCTGCTTCTCAACAAGCTGAATCTTTTACATCCACTTCAGATAGAATGTATATACCTCCATTAGTTCATAGAAATGCAGGCATGCCGCCTAAATCCGAATGGTTATGCATCCCAACTCCTGCTGCACCTCAGAGAATGTATCCGCAAGGTCCAATAGTTTCAGCAGATGAATTTCAAGGCCAAGGAGCATCATTGACAATGCCTGCATCCCAAAGAATA 3123 43.32 MGTQSQTGLIVQNKMLPPQSGRFQDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESRRKRKASSRLINCPFEAIGKKEDDVWMLTIKNEDHNHEPLKDMSEHPYSRRFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPANSSDTVIGNTAKQNLQPKVPNFIGGEFLDSRNCSMVDVINPATQEVVSQVPLTTYEEFKAAVNAAKQAFPSWKNTPISARQRIMFKFQELILRDMDKLVTNIVTEQGKTLKGAQDDILCGLEVVKHACGLAAMQMGKFVPNASDGIDSYCIREPLGVCAGICSLNHPATISLWMFPIAVTCGNTFVLKPCEKHPGASMLLAALAVEAGLPDGVLNIVHGTHDIIDSICDDEDIKVISFASSSTAGKNIHARATATGKQVQSNLGGKSHAIIMPDADMGASFSAVVGAGFGTAGQTCMTLNIVVSVGSSILWEEKLVECAKALEVNVGTDPNADLGPVVTKEVKDRLCRLVQSSIEGGARLLLDGRNIVVPGYENGNFFGPTILSDVTTDMECYKEEFFGPVLLCMQAENLEEAISIVNRNKNRNGASIFTTSGIYARKFQSEVEVGMVGINVAVPVPLPSSFNGLNSSFAVDLVFFDLEFYTKLKRVAQQWKNLPSIGVSMATPSPSERDLRARAVPPVLASMCEKDSPGGHGSLPPLPNPRISQTDLTIERAASSPPTPDRDLHGPGLSLISTLSSEGDVSNQDLSPAMPSAADSNLPGQAMSMATSRSSERLYIPQKSHWNETQRADSIPPSSEQIHGPSSHTNSIKAQASRSTHPALVLAAEGLYVPTSHDSICLITHGSDSTVPSRRIGSICQPSERVYMLATSHLNDSMSQTLQRTDASMFSSSERHYVPPTSHKNDHISLASHTEVALQSTSDRIYLSSLTEREDNMASAASQQAESFTSTSDRMYIPPLVHRNAGMPPKSEWLCIPTPAAPQRMYPQGPIVSADEFQGQGASLTMPASQRI 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15591048 15602297 + MC01g1001 Mch1g1365 676257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1365 1041 MobiDBLite consensus disorder prediction 763 784 - -
Mch1g1365 1041 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 231 661 IPR016162 GO:0016491(InterPro)
Mch1g1365 1041 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 216 463 - -
Mch1g1365 1041 Pfam Transcription factor AFT 23 112 IPR014842 GO:0000981(InterPro)|GO:0010106(InterPro)|GO:0045944(InterPro)
Mch1g1365 1041 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 457 656 - -
Mch1g1365 1041 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 213 684 IPR010061 GO:0004491(InterPro)
Mch1g1365 1041 MobiDBLite consensus disorder prediction 746 846 - -
Mch1g1365 1041 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 699 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Mch1g1365 1041 MobiDBLite consensus disorder prediction 790 846 - -
Mch1g1365 1041 MobiDBLite consensus disorder prediction 717 736 - -
Mch1g1365 1041 CDD ALDH_F6_MMSDH 212 684 IPR010061 GO:0004491(InterPro)
Mch1g1365 1041 Pfam Aldehyde dehydrogenase family 222 679 IPR015590 GO:0016491(InterPro)
Mch1g1365 1041 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 457 656 IPR016163 GO:0016620(InterPro)
Mch1g1365 1041 SUPERFAMILY ALDH-like 206 686 IPR016161 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1365 K00140 - - csv:101207178 1673.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1365 Mch-Chr1:15591048 Mch4g0868 Mch-Chr4:6230668 5.25E-228 dispersed
Mch1g1365 Mch-Chr1:15591048 Mch8g0005 Mch-Chr8:44312 3.14E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0791 . 15 502 Aldehyde Dehydrogenase Gene Family AT3G24503 74.4 1.2e-214 742.7
Mch8g0005 . 30 532 Aldehyde Dehydrogenase Gene Family AT3G24503 54.6 1.0e-160 563.5
Mch6g0160 . 59 544 Aldehyde Dehydrogenase Gene Family AT3G24503 55.0 3.4e-156 548.5
Mch6g0160 . 1 544 Aldehyde Dehydrogenase Gene Family AT3G48000 79.8 2.5e-258 887.9
Mch8g0005 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.1 1.3e-246 849.0
Mch6g0791 . 17 502 Aldehyde Dehydrogenase Gene Family AT3G48000 57.0 1.5e-165 579.7
Mch8g0005 . 1 375 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 8.0e-172 600.1
Mch6g0160 . 1 387 Aldehyde Dehydrogenase Gene Family AT1G23800 74.7 1.1e-168 589.7
Mch6g0791 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 56.5 7.1e-104 374.4
Mch11g0840 . 8 479 Aldehyde Dehydrogenase Gene Family AT4G34240 65.7 8.6e-182 633.6
Mch11g0840 . 69 479 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 3.5e-178 621.3
Mch10g0749 . 61 476 Aldehyde Dehydrogenase Gene Family AT1G44170 51.7 7.6e-117 417.5
Mch2g0136 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 4.2e-115 411.8
Mch10g0749 . 1 479 Aldehyde Dehydrogenase Gene Family AT4G36250 64.1 1.0e-186 649.8
Mch2g0136 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 7.8e-158 553.9
Mch2g0759 . 39 539 Aldehyde Dehydrogenase Gene Family AT1G79440 76.3 5.2e-232 800.4
Mch4g0868 . 7 494 Aldehyde Dehydrogenase Gene Family AT2G14170 83.4 5.5e-238 820.5
Mch1g1365 . 177 685 Aldehyde Dehydrogenase Gene Family AT2G14170 60.2 4.3e-182 634.8
Mch6g0182 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 2.3e-250 861.3
Mch6g0182 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.2 7.9e-254 872.8
Mch8g2991 . 1 523 Aldehyde Dehydrogenase Gene Family AT2G24270 85.5 9.9e-265 909.1
Mch3g1524 . 37 557 Aldehyde Dehydrogenase Gene Family AT5G62530 79.9 8.4e-257 882.9
Mch7g1231 . 56 642 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.2e-277 952.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010728 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 1 3 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42754 PF00171 Aldedh 2.60E-117 CL0099 Mch TF