Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1365 ATGGGAACTCAAAGTCAAACAGGATTAATAGTACAAAACAAGATGCTTCCTCCTCAATCTGGAAGATTTCAAGATCGTGAAGATCTCATTAAATATGTTCGTGATTTTGGTGCTGATCAGGGATATGTGGTAACGATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTCGGTTGTGATAGAGGGGGTGTGTACCGAAACAGGCGTAAGATTGATGAGAGTCGACGCAAAAGGAAAGCTAGCTCACGCTTGATAAATTGTCCGTTTGAAGCAATTGGTAAGAAGGAAGATGATGTCTGGATGCTTACCATTAAAAATGAGGACCATAACCATGAGCCCTTAAAAGACATGTCAGAGCATCCTTATAGTCGCCGTTTCACTGAGGATGAGGTAAAGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAGCAACATAATCCAGATCTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCTAAAATTCGTCAAGGAAACCTATCAGAAAAAAATTTCAAGTCATGGCGACCTAATATCTCAGTTCCTGCTAATAGTAGTGATACTGTCATTGGGAATACAGCCAAGCAAAACCTTCAGCCGAAAGTTCCTAATTTTATTGGAGGAGAATTTTTGGATTCGCGCAACTGTTCAATGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCAAGTACCTTTAACAACCTATGAAGAGTTTAAGGCTGCAGTTAATGCAGCAAAACAAGCTTTTCCCTCCTGGAAAAATACACCTATTTCTGCTCGTCAACGTATTATGTTCAAGTTCCAGGAGCTCATCCTCAGAGACATGGATAAGCTTGTGACGAATATTGTCACAGAACAGGGCAAAACATTAAAGGGTGCTCAAGATGATATCCTCTGTGGTTTAGAGGTGGTCAAACATGCTTGTGGATTGGCCGCTATGCAAATGGGGAAGTTCGTCCCTAATGCATCTGATGGAATTGATTCCTACTGCATCCGAGAACCACTAGGTGTTTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAATTTCCTTATGGATGTTTCCGATTGCAGTTACATGTGGCAATACATTTGTCCTTAAGCCATGTGAAAAGCACCCGGGGGCTTCAATGCTACTAGCTGCATTAGCAGTGGAGGCTGGTTTGCCCGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATTGATTCTATATGTGATGATGAGGACATAAAAGTCATATCCTTTGCCAGTTCAAGTACAGCTGGAAAGAATATACATGCGAGGGCAACTGCCACTGGAAAACAAGTTCAGTCCAATTTAGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTGATATGGGGGCTAGTTTTAGTGCTGTTGTTGGTGCTGGATTTGGTACTGCGGGACAGACATGTATGACTCTCAACATTGTTGTCTCCGTTGGAAGTTCAATTCTATGGGAAGAAAAACTTGTGGAATGTGCGAAAGCACTTGAAGTGAATGTGGGGACAGATCCCAATGCTGACCTTGGTCCTGTAGTTACCAAAGAGGTGAAAGATCGTTTATGTAGATTAGTTCAAAGTTCCATTGAAGGTGGTGCTAGACTCCTGCTTGATGGTAGAAACATTGTGGTGCCGGGATATGAAAATGGAAACTTTTTTGGTCCTACTATTCTATCCGATGTAACAACCGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCGGAGAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATTTTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGAAGTGGAAGTGGGAATGGTTGGTATCAATGTTGCTGTTCCAGTTCCATTGCCATCTTCCTTTAATGGTTTGAACTCATCTTTTGCTGTAGATCTAGTTTTTTTCGACCTGGAATTTTACACCAAGTTGAAAAGAGTGGCTCAACAGTGGAAGAACCTACCAAGTATTGGAGTCTCAATGGCAACGCCTTCCCCATCTGAGAGAGATTTGAGAGCTCGTGCTGTACCTCCAGTGTTGGCTTCAATGTGTGAGAAGGATTCACCTGGTGGGCACGGAAGTTTACCTCCGCTGCCAAACCCTCGAATATCTCAGACAGATTTAACCATTGAAAGAGCCGCCTCATCTCCGCCAACTCCTGACAGGGATTTACATGGTCCAGGACTCTCCCTGATTTCAACTTTATCATCAGAGGGGGATGTATCCAACCAAGATCTGTCCCCTGCTATGCCTTCAGCAGCTGATAGCAATTTACCTGGCCAAGCTATGTCAATGGCTACATCCCGATCATCCGAGAGACTGTACATACCTCAGAAATCTCATTGGAATGAAACCCAGAGAGCTGATTCAATTCCACCCAGTTCCGAGCAGATCCATGGGCCCTCATCACATACAAACAGCATTAAAGCACAGGCATCTCGATCGACTCACCCTGCTTTGGTCTTAGCTGCAGAGGGTTTATACGTGCCTACATCTCATGACAGTATTTGCCTGATAACCCATGGAAGTGATAGCACAGTTCCATCTCGAAGAATCGGCAGCATCTGTCAACCATCGGAACGAGTATACATGCTAGCAACTTCCCATCTGAACGACAGTATGAGTCAAACATTGCAGAGAACTGATGCCTCCATGTTTTCTTCTTCTGAGAGGCATTATGTGCCTCCCACTTCTCATAAAAATGACCACATCAGCTTGGCCTCTCATACCGAGGTTGCTTTGCAATCAACTTCAGATAGGATATACTTGTCTAGCTTGACCGAGAGGGAAGATAATATGGCTTCCGCTGCTTCTCAACAAGCTGAATCTTTTACATCCACTTCAGATAGAATGTATATACCTCCATTAGTTCATAGAAATGCAGGCATGCCGCCTAAATCCGAATGGTTATGCATCCCAACTCCTGCTGCACCTCAGAGAATGTATCCGCAAGGTCCAATAGTTTCAGCAGATGAATTTCAAGGCCAAGGAGCATCATTGACAATGCCTGCATCCCAAAGAATA 3123 43.32 MGTQSQTGLIVQNKMLPPQSGRFQDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESRRKRKASSRLINCPFEAIGKKEDDVWMLTIKNEDHNHEPLKDMSEHPYSRRFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPANSSDTVIGNTAKQNLQPKVPNFIGGEFLDSRNCSMVDVINPATQEVVSQVPLTTYEEFKAAVNAAKQAFPSWKNTPISARQRIMFKFQELILRDMDKLVTNIVTEQGKTLKGAQDDILCGLEVVKHACGLAAMQMGKFVPNASDGIDSYCIREPLGVCAGICSLNHPATISLWMFPIAVTCGNTFVLKPCEKHPGASMLLAALAVEAGLPDGVLNIVHGTHDIIDSICDDEDIKVISFASSSTAGKNIHARATATGKQVQSNLGGKSHAIIMPDADMGASFSAVVGAGFGTAGQTCMTLNIVVSVGSSILWEEKLVECAKALEVNVGTDPNADLGPVVTKEVKDRLCRLVQSSIEGGARLLLDGRNIVVPGYENGNFFGPTILSDVTTDMECYKEEFFGPVLLCMQAENLEEAISIVNRNKNRNGASIFTTSGIYARKFQSEVEVGMVGINVAVPVPLPSSFNGLNSSFAVDLVFFDLEFYTKLKRVAQQWKNLPSIGVSMATPSPSERDLRARAVPPVLASMCEKDSPGGHGSLPPLPNPRISQTDLTIERAASSPPTPDRDLHGPGLSLISTLSSEGDVSNQDLSPAMPSAADSNLPGQAMSMATSRSSERLYIPQKSHWNETQRADSIPPSSEQIHGPSSHTNSIKAQASRSTHPALVLAAEGLYVPTSHDSICLITHGSDSTVPSRRIGSICQPSERVYMLATSHLNDSMSQTLQRTDASMFSSSERHYVPPTSHKNDHISLASHTEVALQSTSDRIYLSSLTEREDNMASAASQQAESFTSTSDRMYIPPLVHRNAGMPPKSEWLCIPTPAAPQRMYPQGPIVSADEFQGQGASLTMPASQRI 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15591048 15602297 + MC01g1001 Mch1g1365 676257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1365 1041 MobiDBLite consensus disorder prediction 763 784 - -
Mch1g1365 1041 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 231 661 IPR016162 GO:0016491(InterPro)
Mch1g1365 1041 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 216 463 - -
Mch1g1365 1041 Pfam Transcription factor AFT 23 112 IPR014842 GO:0000981(InterPro)|GO:0010106(InterPro)|GO:0045944(InterPro)
Mch1g1365 1041 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 457 656 - -
Mch1g1365 1041 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 213 684 IPR010061 GO:0004491(InterPro)
Mch1g1365 1041 MobiDBLite consensus disorder prediction 746 846 - -
Mch1g1365 1041 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 699 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Mch1g1365 1041 MobiDBLite consensus disorder prediction 790 846 - -
Mch1g1365 1041 MobiDBLite consensus disorder prediction 717 736 - -
Mch1g1365 1041 CDD ALDH_F6_MMSDH 212 684 IPR010061 GO:0004491(InterPro)
Mch1g1365 1041 Pfam Aldehyde dehydrogenase family 222 679 IPR015590 GO:0016491(InterPro)
Mch1g1365 1041 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 457 656 IPR016163 GO:0016620(InterPro)
Mch1g1365 1041 SUPERFAMILY ALDH-like 206 686 IPR016161 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1365 Mch-Chr1:15591048 Mch4g0868 Mch-Chr4:6230668 5.25E-228 dispersed
Mch1g1365 Mch-Chr1:15591048 Mch8g0005 Mch-Chr8:44312 3.14E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42754 PF00171 Aldedh 2.60E-117 CL0099 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1365 K00140 - csv:101207178 1673.29