Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1377 | ATGGCGAAGGAGAAGATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACCTTCTCCAAGCGGCGGAGGGGGCTTTTCAAGAAAGCGAAAGAGCTATCCGTTCTCTGTGATGCCGACGTCGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAATACTCCAGCTCTAGCATGAAGGGAATTATAGAAAGGCATCATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTAGTTGAAAACAGCAACTATACCCGATTAAACAAGGAAATTGCAGAGAAAACTCACCAGCTAAGGCAGATGAGAGGAGAGGAGCTCCAAGCATTGAATATAGAGGAACTGCAGCAGCTAGAGAAGTCGCTAGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGTATTTTCACTTTCTTCACAAGTCGTAGAGATCAAGTCCCCATTTCCTTCTGATATACAGTACATTTTTATGTTCCAGGGCGAAAGGATCATGAAGGAGATCAATGATCTTCAAAGAAAGTCGGCAGAATTGATGGAAGAGAATAAGCGACTGAAACAGCATGCGGACAAGATGAATGGGGTGAAGCATATTAGCGTCGAGCCTGAGAATTTGGCCGTGGAAGATGGCCAGTCGTCGAACTCCATTACTGAAGCCTGTGTGTCCAACTCCAATGGCGGCCCGCCTCAAGATCTGGAAAGCTCAGATACATCTCTGAAACTAGGGCTGCCGTATTCTGGGTGA | 768 | 47.14 | MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHHLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQALNIEELQQLEKSLESGLSRVMEKKVFSLSSQVVEIKSPFPSDIQYIFMFQGERIMKEINDLQRKSAELMEENKRLKQHADKMNGVKHISVEPENLAVEDGQSSNSITEACVSNSNGGPPQDLESSDTSLKLGLPYSG | 255 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 15668564 | 15672528 | - | MC01g1013 | Mch1g1377 | 676269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1377 | 255 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch1g1377 | 255 | Coils | Coil | 94 | 114 | - | - | |
| Mch1g1377 | 255 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch1g1377 | 255 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Mch1g1377 | 255 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch1g1377 | 255 | MobiDBLite | consensus disorder prediction | 212 | 255 | - | - | |
| Mch1g1377 | 255 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 218 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch1g1377 | 255 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch1g1377 | 255 | SUPERFAMILY | SRF-like | 3 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch1g1377 | 255 | Pfam | K-box region | 91 | 154 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch1g1377 | 255 | ProSiteProfiles | K-box domain profile. | 87 | 193 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch1g1377 | 255 | Coils | Coil | 121 | 141 | - | - | |
| Mch1g1377 | 255 | Coils | Coil | 169 | 199 | - | - | |
| Mch1g1377 | 255 | MobiDBLite | consensus disorder prediction | 214 | 255 | - | - | |
| Mch1g1377 | 255 | FunFam | Transcription factor, MADS-box | 13 | 83 | - | - | |
| Mch1g1377 | 255 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch1g1377 | 255 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch1g1377 | 255 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1377 | Mch-Chr1:15668564 | Mch7g0741 | Mch-Chr7:12030179 | 2.04E-35 | dispersed | |
| Mch1g0406 | Mch-Chr1:8244138 | Mch1g1377 | Mch-Chr1:15668564 | 1.41E-30 | wgd | |
| Mch1g1377 | Mch-Chr1:15668564 | Mch8g0275 | Mch-Chr8:1878009 | 1.76E-75 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42755 | PF01486 | K-box | 4.40E-13 | No_clan | Mch | TF |
Pathway information