Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1386 ATGGCGGATAGTTTTTACTGTACAGAGAACACCAATAGTTGTTTTGATGAATTTGATAATTGTGATGCCACAAATTATGAGTTTGGTAGTCAAAACCCGAGTGTTGACTGTGAGACTTTGATGGGCTCTGCTTTAGAGAGTGAAGAGAGGGTGAGGGCTTTGGTAGAGAAAGAGATTGAACATTTGCCTAGAAATGATTATCTTAAGAGAATGCGCAGTGGGGATTTGGACTTGAAGTTTAGGAGAGAAGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGAGCTCTGAGTCTTTGTCTATCAATGAACTACTTGGACCGTTTCCTCTCAGTTTATCACTTGCCCATGGACAAAAGCTGGACTGTGCAACTGCTGTCAGTGGCTTGTGTGTCTCTAGCAGCTAAGATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCCAAGTTTGTGTTTGAAGCTAGAACCATACAAAGAATGGAGCTTCTGGTTCTGAGTAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTATCTTTCATTGATTATTTCCTCAGAAATATCACTGTTGGGCAGCATGTACCAAGCCTATCTCTCCTCTTAAAATCTGCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAGATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTGCAAGCACCAGACATAGATAAAGCAATTCTTTCTTTCCCATATATGGAGAAAGAGAGAGTGATGAAGTGTATTGAACTGATTAAAGATTTGTCATTGATTAATAATGTGTATGGAAATTCATTGGGTGGTGGCGGTGGTGGTTCAATTCCTCAGAGCCCAGTTGGGGTGTTGGATGCAGCTTGTTTTAGTTACAAAACGGAAGAATTAACCGCTGGATCATGTGGTAATTCTTCTTCTTCTTCTTCTTTTTCTTCCCATGACAGTCCAGACAGCAAGAGGAGGAGACAAGACAGACCATCACCAAAAGTTGATTCAAATCCATCCATGTCCTGTCAATTGAGAGACAATACACAAGAGAGAGAGAGAGAAAATAGAGAGGGTGGTGAATAA 1122 41.53 MADSFYCTENTNSCFDEFDNCDATNYEFGSQNPSVDCETLMGSALESEERVRALVEKEIEHLPRNDYLKRMRSGDLDLKFRREAVDWIWKAHAHYSFGALSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEARTIQRMELLVLSRLKWKMQAITPLSFIDYFLRNITVGQHVPSLSLLLKSAQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDIDKAILSFPYMEKERVMKCIELIKDLSLINNVYGNSLGGGGGGSIPQSPVGVLDAACFSYKTEELTAGSCGNSSSSSSFSSHDSPDSKRRRQDRPSPKVDSNPSMSCQLRDNTQERERENREGGE 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15753203 15755961 + MC01g1021 Mch1g1386 676278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1386 373 Pfam Cyclin, C-terminal domain 183 275 IPR004367 -
Mch1g1386 373 SMART Cyclin_C_2 183 296 IPR004367 -
Mch1g1386 373 Gene3D - 53 269 - -
Mch1g1386 373 Pfam Cyclin, N-terminal domain 52 180 IPR006671 -
Mch1g1386 373 PANTHER CYCLINS 47 244 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch1g1386 373 CDD CYCLIN_AtCycD-like_rpt2 183 271 - -
Mch1g1386 373 Gene3D - 64 181 - -
Mch1g1386 373 MobiDBLite consensus disorder prediction 316 330 - -
Mch1g1386 373 FunFam D2/4-type cyclin 64 176 - -
Mch1g1386 373 SUPERFAMILY Cyclin-like 46 180 IPR036915 -
Mch1g1386 373 CDD CYCLIN_AtCycD-like_rpt1 81 178 - -
Mch1g1386 373 ProSitePatterns Cyclins signature. 81 112 IPR048258 -
Mch1g1386 373 FunFam D6-type cyclin 177 269 - -
Mch1g1386 373 MobiDBLite consensus disorder prediction 359 373 - -
Mch1g1386 373 MobiDBLite consensus disorder prediction 331 345 - -
Mch1g1386 373 SMART cyclin_7 86 174 IPR013763 -
Mch1g1386 373 MobiDBLite consensus disorder prediction 316 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1386 Mch-Chr1:15753203 Mch8g0665 Mch-Chr8:4726293 4.30E-51 dispersed
Mch10g0416 Mch-Chr10:2749009 Mch1g1386 Mch-Chr1:15753203 2.70E-58 transposed
Mch1g0702 Mch-Chr1:10997400 Mch1g1386 Mch-Chr1:15753203 1.02E-29 transposed
Mch2g0598 Mch-Chr2:4104622 Mch1g1386 Mch-Chr1:15753203 8.56E-32 transposed
Mch1g1386 Mch-Chr1:15753203 Mch8g0255 Mch-Chr8:1702853 7.41E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1386 K18810 - csv:101209378 515.768