Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1388 ATGGATTTCGACGATCAAGAGGAGCAGGAGGAGGAGCAGGAGGAGGAGCTGGAGATGGATTACGAGTCGCGAGGTGTGAAAATGGGGAGTAGTACTGGACAACCCAATATTTGTGGGGTCAAGCAGAGGAAACCTAGGTACCGTGAGTGCTTGAAGAATCACGCGGTTGGCATCGGCGGACACGCCCTCGACGGCTGCGGCGAGTTTCTAGCCGCTGGGCCCGACGGCACCCTCGACGCCCTCAAGTGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACCGACTCGGTCAACGCCGCACTCGGACTCGGGATCGGAATCGGAGTGGGAGAGCCGTTTCTGTTACCGCACCCGCACCCGCAGTTCTACCGGAGTCCAGCTGGGTACCTCCACGTGGCGCCACAGCACAGGCCGCTGGCTCTGCCGTCGACGTCGGGCGGGAGGGAGGAGCAGGAGGACATGTCGAACCCGAATAGCAGCGGGAAGAAGAGATTCCGGACGAAATTCACGCAGGAGCAGAAGGATAGAATGCTGGGGTTGGCTGAAACATTGGGGTGGAGAATTCAGAAGCAGGACGAGGCGGTGGTTCAGCAGTTCTGCAGCGACACCGGCGTCAAGCGCCACGTCCTCAAGGTCTGGATGCACAATAACAAGCACACTCTCGGTAAGAAACCC 684 60.09 MDFDDQEEQEEEQEEELEMDYESRGVKMGSSTGQPNICGVKQRKPRYRECLKNHAVGIGGHALDGCGEFLAAGPDGTLDALKCAACNCHRNFHRKETDSVNAALGLGIGIGVGEPFLLPHPHPQFYRSPAGYLHVAPQHRPLALPSTSGGREEQEDMSNPNSSGKKRFRTKFTQEQKDRMLGLAETLGWRIQKQDEAVVQQFCSDTGVKRHVLKVWMHNNKHTLGKKP 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15767323 15768006 - MC01g1023 Mch1g1388 676280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1388 228 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 46 96 IPR006456 -
Mch1g1388 228 FunFam Zinc-finger homeodomain protein 2 152 226 - -
Mch1g1388 228 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 47 96 IPR006456 -
Mch1g1388 228 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 224 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch1g1388 228 MobiDBLite consensus disorder prediction 1 38 - -
Mch1g1388 228 MobiDBLite consensus disorder prediction 140 167 - -
Mch1g1388 228 Pfam ZF-HD protein dimerisation region 46 97 IPR006456 -
Mch1g1388 228 SUPERFAMILY Homeodomain-like 156 226 IPR009057 -
Mch1g1388 228 MobiDBLite consensus disorder prediction 1 19 - -
Mch1g1388 228 Gene3D - 149 226 - -
Mch1g1388 228 NCBIfam homeobox domain, ZF-HD class 165 221 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1388 Mch-Chr1:15767323 Mch8g0775 Mch-Chr8:5475107 7.02E-54 dispersed
Mch1g1388 Mch-Chr1:15767323 Mch10g0649 Mch-Chr10:4470006 4.11E-67 wgd
Mch1g1388 Mch-Chr1:15767323 Mch8g0250 Mch-Chr8:1661113 8.03E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42757 PF04770 ZF-HD_dimer 9.00E-29 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1388 - - - 0.0