Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1404 ATGGATTTACTCTTGGGTTATAAACACAATATGGTTGCTTCTAAGGGGGAGCGCCTCGTTTGTCGCCTTCACAAGTCCGTTTATGGCCTCAAGCAAGCCTCTCGCCAATGGTTTGACAAATTCTCTTGTGCTCTTTTGCATTTGAGGTTTCAACAATCTAAATCTGATTATTCCTTATTCACTAGAGGTGCTGGAGATACTTTTGTGGCTCTACTTGTATATGTAGACGATATTATACTAACTGAGGCTTCTTCTTTGCTTTTGGGGCAGTTAAAGACTCATCTTGACAGTGTTTTTAAGCTTAAAGACTTGGGATCCTTGCGATATTTTTTGGGTTTGGAACTTGCTCGGTCATCCTCTGGCATTCTCTTGTCTCAACGAAATTATGCACTTCATTTATTTGAAGATTCTGGTTTGTTAGCTTCTAAACCGGCCACTCTTCCAATGGATCCTACTGTTAAGCTTTCTTCCTCTGTTGGCAAGTTGTTGGATGATCCTACTGCCTATCGACGTCTTATTGGTCGTCTTATCTATCTTACCATTTCGAGGCCCGACATCACTTTTGTTGTCCATAAGTTGAGCCAGTATATTGCTCATCTTACTGCTGCTTTTCATCTTCTTCAATATTTGAAAGGCTCACTGGGTCAAGGCATTTTTTTGAAAAGCTCTACTTCTTTTCATTTACGTGCCTTCTCTGATACTGATTTGGCATCCTGTTTGGATTCTCGAAAATCAACTACAGGGTTTTGTATCTTCTTGGGCGATTCTTTGGTCTCATGGAAGGCTAAAAAGCAAACCACTGTGTCCCGTTCTTCGGCTGAGGCCGAATACCAAGCGTTGGCTGCTACTACTTCTGAAATTGTGTGGATTACTCATTTATTGTAG 885 41.13 MDLLLGYKHNMVASKGERLVCRLHKSVYGLKQASRQWFDKFSCALLHLRFQQSKSDYSLFTRGAGDTFVALLVYVDDIILTEASSLLLGQLKTHLDSVFKLKDLGSLRYFLGLELARSSSGILLSQRNYALHLFEDSGLLASKPATLPMDPTVKLSSSVGKLLDDPTAYRRLIGRLIYLTISRPDITFVVHKLSQYIAHLTAAFHLLQYLKGSLGQGIFLKSSTSFHLRAFSDTDLASCLDSRKSTTGFCIFLGDSLVSWKAKKQTTVSRSSAEAEYQALAATTSEIVWITHLL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15891625 15893167 - MC01g_new0370 Mch1g1404 676296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1404 294 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 17 149 IPR013103 -
Mch1g1404 294 SUPERFAMILY DNA/RNA polymerases 20 293 IPR043502 -
Mch1g1404 294 CDD RNase_HI_RT_Ty1 229 294 - -
Mch1g1404 294 PANTHER INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 100 294 IPR052510 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1404 Mch-Chr1:15891625 Mch9g1582 Mch-Chr9:18058269 3.77E-60 dispersed
Mch10g1214 Mch-Chr10:9707660 Mch1g1404 Mch-Chr1:15891625 4.65E-89 transposed
Mch2g1093 Mch-Chr2:7387860 Mch1g1404 Mch-Chr1:15891625 8.07E-22 transposed
Mch2g1868 Mch-Chr2:18559384 Mch1g1404 Mch-Chr1:15891625 4.79E-64 transposed
Mch3g0492 Mch-Chr3:8837568 Mch1g1404 Mch-Chr1:15891625 1.94E-23 transposed
Mch4g1423 Mch-Chr4:17700047 Mch1g1404 Mch-Chr1:15891625 2.76E-12 transposed
Mch9g1505 Mch-Chr9:17420568 Mch1g1404 Mch-Chr1:15891625 2.28E-142 transposed
Mch1g0376 Mch-Chr1:7646938 Mch1g1404 Mch-Chr1:15891625 2.34E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1404 - - - 0.0