Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1412 AGTCCAAGTCCAACAGTAAAGTCAAACTCCACTACGATACAATTAAATTCGGCCCCATCGCCGGTTCTCTCCTCGCCATTTCCTGATCCTCTTCCTTCCCCAATGGAATTCCCCGGCGACCCACTTCAGACCAGCCTCACCGGAGACGGCGACCCGCGCCCTCCCTTGCACAACCTCTCCACGATCCGCTCCAGAATGGATGCCCTCCAAAGCTTCCTATCCGGTCGAATCGAAAGGGAGGTTCGCATCAGCAATCGTGAGATGGATGCCGTGTCCTCTGAAATCGCCACCGCGATCCACCAGATTATTGTTAACGGCGCCGCTCTTCTGGCCTGCGCCCAAGTGAAGACCCCCAACACGCCGGCTTCTACGAGTCAAACACAAACTCATCCGATTCCCGTAACAGGGAAATCAATGGGGGAGCTCAAAATCGAGGCTGTGGATGAGACTGCGAGGCCCGAATCCGAGGAATTCGACTCGGATTGTGAAATCGTGGAGCTGGACGCGGTGGAGTTGCTGGCGGAGCACATCCATTTCTGCGAAATATGCGGGAAGGGGTTCAAGCGGGACGCGAATTTGCGGATGCACATGCGCGCTCACGGGAACCAATTCAAAACCCCAGAGGCTTTGGCGAAGCCGTTGGATGCCGTTGCTGCGGAGAACAGGTGGAAGCGCACGCGATTCTCGTGTCCGTACGACGGTTGTGTGAGGAACAGGACGCACAGGAAATTCAGGCCTCTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGATGCCACAAAAAGAGCTTCTCCGTAATGGCGGACTTGAAGAGCCACTTAAAGCACTGCGGTGAGTCCAAGTGGCGCTGTTCCTGCGGCACCACTTTCTCCCGTAAGGATAAGTTGTTCGGTCACATGGCGCTGTTCGAGGGCCACATGCCGGCGGTGGCGGAGGACGACGACGGGAAGGGCAAAGCCACGGCGGCGACGCCGGAAATGGATGAAGATGGGGAGGGGAATCGGATGGTGTTCAAGGGTGTGGATTTGCCGGACGCCTCAAATGGTTCGGATGATGGATCTTTCGAATTGTTTCTCGATGGGTTTGGTTCGATTGAGAATCACTGTTTACAAGAGGTGCTGGGGTTTCCCGACGATTTCGATTCGGAATCCGAATGGAAATTTTGTGGGTTT 1209 55.09 SPSPTVKSNSTTIQLNSAPSPVLSSPFPDPLPSPMEFPGDPLQTSLTGDGDPRPPLHNLSTIRSRMDALQSFLSGRIEREVRISNREMDAVSSEIATAIHQIIVNGAALLACAQVKTPNTPASTSQTQTHPIPVTGKSMGELKIEAVDETARPESEEFDSDCEIVELDAVELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDAVAAENRWKRTRFSCPYDGCVRNRTHRKFRPLKSLICVKNHFKRSHCPKMFSCNRCHKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVAEDDDGKGKATAATPEMDEDGEGNRMVFKGVDLPDASNGSDDGSFELFLDGFGSIENHCLQEVLGFPDDFDSESEWKFCGF 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15933667 15934880 - MC01g1042 Mch1g1412 676304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1412 403 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 47 336 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Mch1g1412 403 MobiDBLite consensus disorder prediction 23 37 - -
Mch1g1412 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Mch1g1412 403 FunFam Zinc finger 45-like 175 201 - -
Mch1g1412 403 SMART c2h2final6 178 200 IPR013087 -
Mch1g1412 403 SMART c2h2final6 294 318 IPR013087 -
Mch1g1412 403 SMART c2h2final6 228 261 IPR013087 -
Mch1g1412 403 SMART c2h2final6 266 288 IPR013087 -
Mch1g1412 403 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Mch1g1412 403 MobiDBLite consensus disorder prediction 324 346 - -
Mch1g1412 403 Gene3D Classic Zinc Finger 253 323 - -
Mch1g1412 403 Pfam Zinc finger, C2H2 type 178 200 IPR013087 -
Mch1g1412 403 SUPERFAMILY beta-beta-alpha zinc fingers 175 201 IPR036236 -
Mch1g1412 403 Gene3D Classic Zinc Finger 178 201 - -
Mch1g1412 403 MobiDBLite consensus disorder prediction 1 22 - -
Mch1g1412 403 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1412 Mch-Chr1:15933667 Mch3g0609 Mch-Chr3:10522440 2.11E-68 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42759 PF12874 zf-met 0.0034 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1412 - - - 0.0