Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1451 ATGGCGGGCCAATCGTCAGATGCTTCCCCTCTTATTCCACCGCCACCGATCGGCGACCCTGGGGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATTTGCCTTGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGAACATCGAAGTATGTTCATCGAGAATGTTTGGATCATTGGCGAGCTGTGAAGGAAGGTTTTGCTTTTGCTCATTGTACCACCTGCAAGACTCCTTACCATTTGAGAGTTTATACTGTCGCTGATAGGAAATGGCGAACCCTGAAATTTCGATTTTTCGTGACTAGAGACGTTATATTTATATTTTTGGCGGTTCAGCTTGTAATTTCTTCTCTGGGATATTTGATGTACTTTATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTCGATAACAAGTTTAGTTTTTATTACATATGTGGGGCTTTGTTATTTTTTGCATTACTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTCAGGAATGATCTGGCTCAACCATGTCGGGAATTGTGCATATGTTGTTGCCATCCTGGACTATGTGCAGACTGTCATTTACCTGGTACTCTCTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGGAGTATAGCAACTGAATGTGGATGCCTAGGAGGTGCCGGTGAAGCAGGACTGCCATTATTACTCATAATGGCCTTGATTGTTCTTGGTTTGTTTACAGTGATTGGGATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCTAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGCGAGATGACAGGAACTGACTGGGTACCTCCAGCACTGCCGGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTCTATGA 972 44.34 MAGQSSDASPLIPPPPIGDPGEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKTPYHLRVYTVADRKWRTLKFRFFVTRDVIFIFLAVQLVISSLGYLMYFIDGCQHYWLRLTWGFDNKFSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCICCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLLIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGTDWVPPALPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16168737 16173793 - MC01g1079 Mch1g1451 676343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1451 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Mch1g1451 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 322 - -
Mch1g1451 323 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
Mch1g1451 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
Mch1g1451 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 95 IPR013083 -
Mch1g1451 323 MobiDBLite consensus disorder prediction 1 23 - -
Mch1g1451 323 SUPERFAMILY RING/U-box 31 87 - -
Mch1g1451 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1451 Mch-Chr1:16168737 Mch6g0759 Mch-Chr6:5212903 3.79E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1451 - - - 0.0