Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1478 ATGCTGAAGAAGAACGGGGAGCTGCTGCAGAGTGATTTATTGTCGCCTGAAGCAATGACGGGGAGGGGGTCATCGGGGAGGACGCCGACATGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGGAGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAACTCCCTAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTTTGTAATGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAGTCCTCATGCTTCCCAAGTCCTGTACCTTCCTATCATGCCAGCCCTTCTTCATCTTCCTTTCCGAGTCCATCTCGATTTGATGGAAATCCATCTTCTTATCTTCTGCCATTCTTTCAAAACATATCCTCTATCCCTGCTAATCTCCCTCCTCTTAGGATATCAAACAGTGCACCTGTCACTCCCCCTCTTTCTTCCCCAACGTCTAGGGGTTCAAAGAGAAAGCCAGATTGGGAGTCCATTTCCAATAGCTACGTGGCCTCTTTCCGCCATCCCCTCTTTGCTGCCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCAGCAACAATTCCAGAATGTGACGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGACACCTTCTATGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTGAATCAACAAAACTGTCTCGAGGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCCCCATCATCTGATAGGGGACGAGGCAGTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACGCTTGGGAGTGGGAAGGCCCGTGGTTAA 1017 50.25 MLKKNGELLQSDLLSPEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPSRFDGNPSSYLLPFFQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESISNSYVASFRHPLFAASAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVTPSMAPPSPTFNLMKPVNQQNCLEDAVDRHGAMGWGAPSSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGSGKARG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16329458 16333039 + MC01g1087 Mch1g1478 676370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1478 338 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 24 337 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Mch1g1478 338 MobiDBLite consensus disorder prediction 1 42 - -
Mch1g1478 338 Pfam BES1/BZR1 plant transcription factor, N-terminal 24 147 IPR008540 -
Mch1g1478 338 MobiDBLite consensus disorder prediction 174 195 - -
Mch1g1478 338 MobiDBLite consensus disorder prediction 28 42 - -
Mch1g1478 338 MobiDBLite consensus disorder prediction 174 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1039 Mch-Chr10:7553712 Mch1g1478 Mch-Chr1:16329458 8.74E-63 transposed
Mch3g1052 Mch-Chr3:14102456 Mch1g1478 Mch-Chr1:16329458 5.45E-68 transposed
Mch1g1478 Mch-Chr1:16329458 Mch8g0752 Mch-Chr8:5326403 9.23E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42762 PF05687 BES1_N 2.80E-64 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1478 K14503 - csv:101216171 552.747