Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1478 ATGCTGAAGAAGAACGGGGAGCTGCTGCAGAGTGATTTATTGTCGCCTGAAGCAATGACGGGGAGGGGGTCATCGGGGAGGACGCCGACATGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGGAGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAACTCCCTAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTTTGTAATGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAGTCCTCATGCTTCCCAAGTCCTGTACCTTCCTATCATGCCAGCCCTTCTTCATCTTCCTTTCCGAGTCCATCTCGATTTGATGGAAATCCATCTTCTTATCTTCTGCCATTCTTTCAAAACATATCCTCTATCCCTGCTAATCTCCCTCCTCTTAGGATATCAAACAGTGCACCTGTCACTCCCCCTCTTTCTTCCCCAACGTCTAGGGGTTCAAAGAGAAAGCCAGATTGGGAGTCCATTTCCAATAGCTACGTGGCCTCTTTCCGCCATCCCCTCTTTGCTGCCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCAGCAACAATTCCAGAATGTGACGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGACACCTTCTATGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTGAATCAACAAAACTGTCTCGAGGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCCCCATCATCTGATAGGGGACGAGGCAGTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACGCTTGGGAGTGGGAAGGCCCGTGGTTAA 1017 50.25 MLKKNGELLQSDLLSPEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPSRFDGNPSSYLLPFFQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESISNSYVASFRHPLFAASAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVTPSMAPPSPTFNLMKPVNQQNCLEDAVDRHGAMGWGAPSSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGSGKARG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16329458 16333039 + MC01g1087 Mch1g1478 676370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1478 338 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 24 337 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Mch1g1478 338 MobiDBLite consensus disorder prediction 1 42 - -
Mch1g1478 338 Pfam BES1/BZR1 plant transcription factor, N-terminal 24 147 IPR008540 -
Mch1g1478 338 MobiDBLite consensus disorder prediction 174 195 - -
Mch1g1478 338 MobiDBLite consensus disorder prediction 28 42 - -
Mch1g1478 338 MobiDBLite consensus disorder prediction 174 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1478 K14503 - - csv:101216171 552.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1039 Mch-Chr10:7553712 Mch1g1478 Mch-Chr1:16329458 8.74E-63 transposed
Mch3g1052 Mch-Chr3:14102456 Mch1g1478 Mch-Chr1:16329458 5.45E-68 transposed
Mch1g1478 Mch-Chr1:16329458 Mch8g0752 Mch-Chr8:5326403 9.23E-114 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0752 . 1 309 BZR Transcription Factor Family AT1G75080 59.4 8.3e-90 327.4
Mch1g1478 . 46 339 BZR Transcription Factor Family AT1G75080 58.8 7.7e-80 294.3
Mch8g0752 . 1 307 BZR Transcription Factor Family AT1G19350 59.9 5.9e-88 321.2
Mch1g1478 . 46 339 BZR Transcription Factor Family AT1G19350 58.1 4.0e-76 282.0
Mch1g1478 . 24 339 BZR Transcription Factor Family AT3G50750 57.2 1.1e-76 283.5
Mch8g0752 . 1 304 BZR Transcription Factor Family AT3G50750 52.0 3.8e-64 241.9
Mch10g1039 . 77 326 BZR Transcription Factor Family AT4G18890 53.9 4.0e-50 194.9
Mch3g1052 . 80 328 BZR Transcription Factor Family AT4G18890 52.4 6.8e-50 194.1
Mch10g1039 . 1 326 BZR Transcription Factor Family AT1G78700 72.8 5.9e-117 417.5
Mch3g1052 . 1 328 BZR Transcription Factor Family AT1G78700 67.0 4.8e-103 371.3
Mch1g1478 . 46 218 BZR Transcription Factor Family AT4G36780 78.0 1.3e-61 233.4
Mch8g0752 . 33 203 BZR Transcription Factor Family AT4G36780 61.3 9.2e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42762 PF05687 BES1_N 2.80E-64 No_clan Mch TF