Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1484 ATGGCCGCCGTGAATCTCCGACCACAACCCGACAACAACGCAATTCTCATCTCCCAGCTCTACAACCACGCCGAAATTCACTCGCGAGTGCTCCCTCAACCCCAACCAGGTGCGGTGGCGGCGGAGGGGAACAAGGCCGGGAGACGGCGGCGGAGGAAGAGCAAAGGGAAAGAAGGGGGGCTGAAGAAGAGGAAGCTGAGTAGGGAGCAGGTGGAGCTTCTGGAGATGAACTTTGGAAACGAACACAAATTGGAATCGGAGAGGAAGGATCGGCTGGCGTCGGAATTGGGGCTTGATCCGCGGCAGGTGGCGGTGTGGTTTCAGAACCGGCGTGCCCGCTGGAAGAACAAGAAGCTGCAGGACGAATATTCCACTCTCAAAAAAGCCCACGATTCCCTCGTTTTGGACAAATCCCATCTCCAATCTCAGATGATGAAACTGAAAGAGGAATTGATGGAGGCGAAGAGGGAGATAAAGCAATTGGTGGAACGGAGCGAGGGGATTTCGAGCAACAGCCGAAGCTCGTCGGTGACAATGGATTTGGAAGGAGCGCAGCCGCCATTTTTGGGAGAGCTGTTTGTGGAAGGATATGAAGATGTATTCTATTACATGCAAATGCAAGACAACAATTACACTCAAGGAATCGACTGGCTTAACCTTTATATGTAG 669 52.62 MAAVNLRPQPDNNAILISQLYNHAEIHSRVLPQPQPGAVAAEGNKAGRRRRRKSKGKEGGLKKRKLSREQVELLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLQDEYSTLKKAHDSLVLDKSHLQSQMMKLKEELMEAKREIKQLVERSEGISSNSRSSSVTMDLEGAQPPFLGELFVEGYEDVFYYMQMQDNNYTQGIDWLNLYM 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16370113 16371763 + MC01g1093 Mch1g1484 676376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1484 222 Coils Coil 137 171 - -
Mch1g1484 222 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
Mch1g1484 222 SUPERFAMILY Homeodomain-like 62 125 IPR009057 -
Mch1g1484 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 172 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Mch1g1484 222 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Mch1g1484 222 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Mch1g1484 222 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
Mch1g1484 222 CDD homeodomain 62 118 IPR001356 GO:0003677(InterPro)
Mch1g1484 222 Gene3D - 52 125 - -
Mch1g1484 222 Coils Coil 109 129 - -
Mch1g1484 222 MobiDBLite consensus disorder prediction 46 61 - -
Mch1g1484 222 MobiDBLite consensus disorder prediction 34 64 - -
Mch1g1484 222 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch1g1484 222 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
Mch1g1484 222 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0748 Mch-Chr10:5174838 Mch1g1484 Mch-Chr1:16370113 2.28E-47 dispersed
Mch1g1484 Mch-Chr1:16370113 Mch5g1673 Mch-Chr5:17522683 3.14E-22 dispersed
Mch1g1484 Mch-Chr1:16370113 Mch1g0893 Mch-Chr1:12252681 3.79E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42763 PF00046 Homeodomain 6.30E-17 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1484 K09338 - csv:101216890 254.218