Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1486 ATGGGGACAGGAGAAGAGGGCACGCCTTCTAAAACTTCTAAACCTCCCTCTTCATCTCAGGAAATACCCCCGACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTTTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAAGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCAATATATCCTCCTGGGGGAGTTTATGCCCATCCTAATATGACCGTGACTCCTGGCTCTGCACCAATCAACGCAGAATATGAAGGAAAATCTCCTAATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCACGTCTGGAAATGCCGGTTCAGGTGGTGCTAGGACTGGGGAAAGTGGAAAGGGGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACGGAGGGCTCATCAGAAGGTAGTGATGAGAATGCTAACCAACAGGAATTTTCTGCAAATAAGAAGGGAAGCTTCAACCAGATGCTAGCAGATGGAGCCAACGCACAAAACAAAACGGGTGGACCAAATGCTAAATCTTCAGTGACTGGGAAACCCGTTACCTCCATTCCTGCAACCAATCTGAACATGGGAATGGATTTGTGGAATGCCACCACTGCTGCCGCTGGGGCTGCAAAAGGGAGACCAAACGCTGTATCCTCAGCTATGGTTCCAGCAGCAATGGTTGGTCGTGATGGTGTGATGTCCGAACAATGGGTTCAAGATGAACGTGAGCTAAAAAGACAGAAAAGGAAACAATCTAACCGAGAGTCTGCCAGACGGTCAAGATTACGTAAGCAGGCGGAGTGCGAAGAATTACAAGCGAGAGTGCAGACATTGAACAACGAGAATCGCAGTCTAAGGGATGAGCTACAGAGGCTGTCCGAGGAATGTGAGAAGCTAACTTCAGAGAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGAGCGGAGGCATTAGCTAACTTTGAAAAGGGAACAACTCCACCGGCTACCCAGTCTCGGGGCAGCGAGGGTAACAACTGA 1101 48.5 MGTGEEGTPSKTSKPPSSSQEIPPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYPAIYPPGGVYAHPNMTVTPGSAPINAEYEGKSPNGKERASKKSKGTSGNAGSGGARTGESGKGASSSGNDGASQSAESGTEGSSEGSDENANQQEFSANKKGSFNQMLADGANAQNKTGGPNAKSSVTGKPVTSIPATNLNMGMDLWNATTAAAGAAKGRPNAVSSAMVPAAMVGRDGVMSEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRSLRDELQRLSEECEKLTSENSSIKEELTRFCGAEALANFEKGTTPPATQSRGSEGNN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16380469 16390601 + MC01g1095 Mch1g1486 676378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1486 366 Coils Coil 280 335 - -
Mch1g1486 366 MobiDBLite consensus disorder prediction 95 217 - -
Mch1g1486 366 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Mch1g1486 366 MobiDBLite consensus disorder prediction 351 366 - -
Mch1g1486 366 CDD bZIP_plant_GBF1 272 322 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1486 366 MobiDBLite consensus disorder prediction 123 217 - -
Mch1g1486 366 MobiDBLite consensus disorder prediction 1 66 - -
Mch1g1486 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 274 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1486 366 MobiDBLite consensus disorder prediction 1 39 - -
Mch1g1486 366 MobiDBLite consensus disorder prediction 264 292 - -
Mch1g1486 366 SUPERFAMILY Leucine zipper domain 270 326 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1486 366 Pfam bZIP transcription factor 267 329 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1486 366 MobiDBLite consensus disorder prediction 347 366 - -
Mch1g1486 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 269 332 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1486 366 Gene3D - 270 325 - -
Mch1g1486 366 SMART brlzneu 267 331 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch1g1486 366 FunFam BZIP transcription factor 269 320 - -
Mch1g1486 366 PANTHER G-BOX-BINDING FACTOR 3-RELATED 17 351 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1486 Mch-Chr1:16380469 Mch6g2213 Mch-Chr6:24410228 4.69E-34 dispersed
Mch1g1486 Mch-Chr1:16380469 Mch10g1695 Mch-Chr10:17017979 4.95E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42764 PF07777 MFMR 1.30E-32 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1486 K09060 - csv:101217128 621.313