Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1488 ATGCCGGCTGATGTAGAAGTAGATGATTCCTCTTCCCCTGAGGCGAAATCTTCCACTAAGAAAAAGCGAAACCTACCCGGAATGCCCGATCCGGAAGCGGAAGTGATTGCTCTGTCCCCGAAGACTTTATTGGCCACAAATCGATTCGTTTGCGAGATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGCCACAATCTTCCGTGGAAACTCCGGCAGAGGTCCAGTAATGAGGTGAAGAAAAAGGTGTATGTCTGCCCTGAGCCGTCGTGTGTTCATCACGACCCCTCCAGAGCTCTGGGTGATCTGACCGGAATTAAGAAACATTTCTGCAGAAAGCACGGCGAGAAGAAGTGGGAATGCGATAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGTACCAGAGAGTACAAATGCGATTGTGGAACTCTGTTTTCTAGGAGGGATAGCTTCATCACGCATAGAGCTTTCTGTGATGCGTTGGCGGGGGAAAGGGCAAAAGCTCAGCCTCAGACGGTGGACAAATCGGATTTAGATTCCGGCTCGAAAGCTGCTAAAACGGTGGTGGCGAGACCGAATCCGGAGCCTTCTCCACCGCCACCGCCATCACCGCCGGCTACATCTCCTCCACAGTCAAGTTGCGAGCTAACAACAAGTGTGTTGCCTGTTCCAAGTCAAGAGTTGCTGGAGAATCCCCCACAATGTATCGAAGAAGCACCGGCTACAACGGGTATAAGCGGGATCGGCAGCAGTAGTAAGAGCTCGAGTAGCAATAGCAGCACGATAAGTGGCGGATTTGCTGGTTTATTTTCTTCCTCATCTACGTCGATAAGCTTTCAACCTCCAAGACACCGCCCTGCATTTACAGACCTAATGCAAGCCATGGCTTGCTCAGATCGCTCGTCCGAACATGCACCATCTCCAAGCATCGAACCGATTTCTCTATGTCTTGCAATGAATCAAGGGCCACCAATGTTTGGAACTACCAGCCAAGACCTCCGACGGTTCACACCGACACCGCAGCCTGCAATATCCGCCACAGCATTGCTGCAAAAGGCTGCCCAAATGGGCTCAGCAGCATCAAATGCCTCACTGCTTCGCGGTTTGGGCTTAGTATCATCTTCCTCTGTAACTGCCCAGCAAGAGAGCTCGCCATGGAACCAGCACAGGCAAGTAGAACCAGATGGCATCTCGATCGCTGCAGGGCTTGGGCTAGGACTTCCCTGTGATGGAAACTCGGGATTGAAGGAACTAATGAGGGGAAACCGTTCCATGTTTGCTCCAAAACATACCACCCTCGATTTCCTCGGATTGGGGATGGCAGCTAGTGGCAGCCCCAGCAGTGGCCTGGCTGCGCTAATTACATCAGTTAGCAGTAGCGTGGACGTTGCCACGGCAACTCGTGACATACCAAGCAAAGACCTGAACAGAAGTAACTGA 1485 51.52 MPADVEVDDSSSPEAKSSTKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWECDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAGERAKAQPQTVDKSDLDSGSKAAKTVVARPNPEPSPPPPPSPPATSPPQSSCELTTSVLPVPSQELLENPPQCIEEAPATTGISGIGSSSKSSSSNSSTISGGFAGLFSSSSTSISFQPPRHRPAFTDLMQAMACSDRSSEHAPSPSIEPISLCLAMNQGPPMFGTTSQDLRRFTPTPQPAISATALLQKAAQMGSAASNASLLRGLGLVSSSSVTAQQESSPWNQHRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNRSMFAPKHTTLDFLGLGMAASGSPSSGLAALITSVSSSVDVATATRDIPSKDLNRSN 494
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 16394687 16398036 - MC01g1097 Mch1g1488 676380
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1488 494 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 124 148 - -
Mch1g1488 494 MobiDBLite consensus disorder prediction 259 277 - -
Mch1g1488 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 71 IPR013087 -
Mch1g1488 494 FunFam protein indeterminate-domain 5, chloroplastic-like 103 182 - -
Mch1g1488 494 Pfam Zinc finger, C2H2 type 49 71 IPR013087 -
Mch1g1488 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 458 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch1g1488 494 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 151 189 - -
Mch1g1488 494 Gene3D Classic Zinc Finger 103 182 - -
Mch1g1488 494 MobiDBLite consensus disorder prediction 9 28 - -
Mch1g1488 494 SUPERFAMILY beta-beta-alpha zinc fingers 48 145 IPR036236 -
Mch1g1488 494 Gene3D Classic Zinc Finger 28 95 - -
Mch1g1488 494 MobiDBLite consensus disorder prediction 207 224 - -
Mch1g1488 494 MobiDBLite consensus disorder prediction 1 32 - -
Mch1g1488 494 FunFam protein indeterminate-domain 12-like 28 96 - -
Mch1g1488 494 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Mch1g1488 494 MobiDBLite consensus disorder prediction 254 277 - -
Mch1g1488 494 SMART c2h2final6 49 71 IPR013087 -
Mch1g1488 494 SMART c2h2final6 125 145 IPR013087 -
Mch1g1488 494 SMART c2h2final6 90 120 IPR013087 -
Mch1g1488 494 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 86 120 - -
Mch1g1488 494 MobiDBLite consensus disorder prediction 179 232 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1488 Mch-Chr1:16394687 Mch5g1758 Mch-Chr5:18158748 7.17E-104 dispersed
Mch1g1488 Mch-Chr1:16394687 Mch1g1490 Mch-Chr1:16406121 3.16E-237 proximal
Mch4g1480 Mch-Chr4:18319755 Mch1g1488 Mch-Chr1:16394687 3.06E-67 transposed
Mch1g1488 Mch-Chr1:16394687 Mch10g0745 Mch-Chr10:5141856 3.52E-139 wgd
Mch1g1488 Mch-Chr1:16394687 Mch11g0205 Mch-Chr11:1311215 7.90E-128 wgd
Mch1g1488 Mch-Chr1:16394687 Mch8g0756 Mch-Chr8:5354386 1.40E-114 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42765 PF00096 zf-C2H2 0.005 CL0361 Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1488 K25869 - csv:101217597 656.366