Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1488 | ATGCCGGCTGATGTAGAAGTAGATGATTCCTCTTCCCCTGAGGCGAAATCTTCCACTAAGAAAAAGCGAAACCTACCCGGAATGCCCGATCCGGAAGCGGAAGTGATTGCTCTGTCCCCGAAGACTTTATTGGCCACAAATCGATTCGTTTGCGAGATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGCCACAATCTTCCGTGGAAACTCCGGCAGAGGTCCAGTAATGAGGTGAAGAAAAAGGTGTATGTCTGCCCTGAGCCGTCGTGTGTTCATCACGACCCCTCCAGAGCTCTGGGTGATCTGACCGGAATTAAGAAACATTTCTGCAGAAAGCACGGCGAGAAGAAGTGGGAATGCGATAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGTACCAGAGAGTACAAATGCGATTGTGGAACTCTGTTTTCTAGGAGGGATAGCTTCATCACGCATAGAGCTTTCTGTGATGCGTTGGCGGGGGAAAGGGCAAAAGCTCAGCCTCAGACGGTGGACAAATCGGATTTAGATTCCGGCTCGAAAGCTGCTAAAACGGTGGTGGCGAGACCGAATCCGGAGCCTTCTCCACCGCCACCGCCATCACCGCCGGCTACATCTCCTCCACAGTCAAGTTGCGAGCTAACAACAAGTGTGTTGCCTGTTCCAAGTCAAGAGTTGCTGGAGAATCCCCCACAATGTATCGAAGAAGCACCGGCTACAACGGGTATAAGCGGGATCGGCAGCAGTAGTAAGAGCTCGAGTAGCAATAGCAGCACGATAAGTGGCGGATTTGCTGGTTTATTTTCTTCCTCATCTACGTCGATAAGCTTTCAACCTCCAAGACACCGCCCTGCATTTACAGACCTAATGCAAGCCATGGCTTGCTCAGATCGCTCGTCCGAACATGCACCATCTCCAAGCATCGAACCGATTTCTCTATGTCTTGCAATGAATCAAGGGCCACCAATGTTTGGAACTACCAGCCAAGACCTCCGACGGTTCACACCGACACCGCAGCCTGCAATATCCGCCACAGCATTGCTGCAAAAGGCTGCCCAAATGGGCTCAGCAGCATCAAATGCCTCACTGCTTCGCGGTTTGGGCTTAGTATCATCTTCCTCTGTAACTGCCCAGCAAGAGAGCTCGCCATGGAACCAGCACAGGCAAGTAGAACCAGATGGCATCTCGATCGCTGCAGGGCTTGGGCTAGGACTTCCCTGTGATGGAAACTCGGGATTGAAGGAACTAATGAGGGGAAACCGTTCCATGTTTGCTCCAAAACATACCACCCTCGATTTCCTCGGATTGGGGATGGCAGCTAGTGGCAGCCCCAGCAGTGGCCTGGCTGCGCTAATTACATCAGTTAGCAGTAGCGTGGACGTTGCCACGGCAACTCGTGACATACCAAGCAAAGACCTGAACAGAAGTAACTGA | 1485 | 51.52 | MPADVEVDDSSSPEAKSSTKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWECDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAGERAKAQPQTVDKSDLDSGSKAAKTVVARPNPEPSPPPPPSPPATSPPQSSCELTTSVLPVPSQELLENPPQCIEEAPATTGISGIGSSSKSSSSNSSTISGGFAGLFSSSSTSISFQPPRHRPAFTDLMQAMACSDRSSEHAPSPSIEPISLCLAMNQGPPMFGTTSQDLRRFTPTPQPAISATALLQKAAQMGSAASNASLLRGLGLVSSSSVTAQQESSPWNQHRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNRSMFAPKHTTLDFLGLGMAASGSPSSGLAALITSVSSSVDVATATRDIPSKDLNRSN | 494 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16394687 | 16398036 | - | MC01g1097 | Mch1g1488 | 676380 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1488 | 494 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 124 | 148 | - | - | |
| Mch1g1488 | 494 | MobiDBLite | consensus disorder prediction | 259 | 277 | - | - | |
| Mch1g1488 | 494 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 49 | 71 | IPR013087 | - | |
| Mch1g1488 | 494 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 103 | 182 | - | - | |
| Mch1g1488 | 494 | Pfam | Zinc finger, C2H2 type | 49 | 71 | IPR013087 | - | |
| Mch1g1488 | 494 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 12 | 458 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Mch1g1488 | 494 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 151 | 189 | - | - | |
| Mch1g1488 | 494 | Gene3D | Classic Zinc Finger | 103 | 182 | - | - | |
| Mch1g1488 | 494 | MobiDBLite | consensus disorder prediction | 9 | 28 | - | - | |
| Mch1g1488 | 494 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 145 | IPR036236 | - | |
| Mch1g1488 | 494 | Gene3D | Classic Zinc Finger | 28 | 95 | - | - | |
| Mch1g1488 | 494 | MobiDBLite | consensus disorder prediction | 207 | 224 | - | - | |
| Mch1g1488 | 494 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Mch1g1488 | 494 | FunFam | protein indeterminate-domain 12-like | 28 | 96 | - | - | |
| Mch1g1488 | 494 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 51 | 71 | IPR013087 | - | |
| Mch1g1488 | 494 | MobiDBLite | consensus disorder prediction | 254 | 277 | - | - | |
| Mch1g1488 | 494 | SMART | c2h2final6 | 49 | 71 | IPR013087 | - | |
| Mch1g1488 | 494 | SMART | c2h2final6 | 125 | 145 | IPR013087 | - | |
| Mch1g1488 | 494 | SMART | c2h2final6 | 90 | 120 | IPR013087 | - | |
| Mch1g1488 | 494 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 86 | 120 | - | - | |
| Mch1g1488 | 494 | MobiDBLite | consensus disorder prediction | 179 | 232 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1488 | Mch-Chr1:16394687 | Mch5g1758 | Mch-Chr5:18158748 | 7.17E-104 | dispersed | |
| Mch1g1488 | Mch-Chr1:16394687 | Mch1g1490 | Mch-Chr1:16406121 | 3.16E-237 | proximal | |
| Mch4g1480 | Mch-Chr4:18319755 | Mch1g1488 | Mch-Chr1:16394687 | 3.06E-67 | transposed | |
| Mch1g1488 | Mch-Chr1:16394687 | Mch10g0745 | Mch-Chr10:5141856 | 3.52E-139 | wgd | |
| Mch1g1488 | Mch-Chr1:16394687 | Mch11g0205 | Mch-Chr11:1311215 | 7.90E-128 | wgd | |
| Mch1g1488 | Mch-Chr1:16394687 | Mch8g0756 | Mch-Chr8:5354386 | 1.40E-114 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42765 | PF00096 | zf-C2H2 | 0.005 | CL0361 | Mch | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g1488 | K25869 | - | csv:101217597 | 656.366 |