Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1490 ATGCCGGCCGATTTAGACAATTCCTCGCCGGCTTCCGGGGAAGCCAGTGTCTCCTCCACCGGAAACGGCGCTCCGCCTCCTAAATCCGCCGCTAAGAAAAAGCGAAATCTACCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCAAAGACTCTAATGGCCACAAATCGATTCGTTTGTGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGCCACAATCTTCCATGGAAACTCCGGCAGAGGTCCAGTAAGGAGGTGAAGAAGAAGGTGTATGTCTGCCCTGAGCCGTCGTGTGTTCATCACGATCCCTCCAGAGCTCTGGGTGATCTGACCGGAATTAAGAAACATTTCTGCAGAAAGCACGGCGAAAAGAAGTGGAAATGCGATAAATGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGTACCAGAGAGTACAAATGCGATTGTGGAACACTGTTTTCCAGGAAGGATAGCTTCATTACGCATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGCGCAAAAGCTCAGCCTCAATTGGTGGAGAAATCGGCTTCAGATTCTGACCCGAAAGGTCAATCTCAAAAGGCGGTGAAGCCAAATCCAGAGCCATCTCCGCCGCCTCCACCACCGTCTCCTCCGGCGGCATCATCTCCGCCGCAGTCAACTTGTGTACTACCCACTGTCTTACCGATTCAGAGTCAAGATCAACCGGAGAATCTGCTGCAATATAACGAAGAAGCACCGGCTACAATGGGCATGAGTGGGAGCTGCAGCAGCAGCAAGAGCCCCAGCAGCAACAGCAGCTCGAGTAGCCGATTTGCTAGCTTGTTTACGTCCTCAACTACGTCGTTAAGCCTGCAACCTCCTCAACCCCCAGCGTTTACTGACTTAATACATGCCATGGCTTGTTCAGATCGCTCATCGGACTATGCTCCAACTTCGACTACCGAACCTATTTCTCTGTGTCTTTCAAGTAGCCATGGGGCATCAATCTTCGGGGCAGCCACGCAAGAGCTCCGGCAGTACACGCCAGCGCCACAGCCAGCAATGTCTGCAACTGCATTGCTACAAAAAGCCGCTCAAATTGGAGCAGCAGCATCAAACGCCTCGCTGCTTCGTGGGTTGGGCTTAGTACCATCTTCCTCTTCCGCTGCGCAGCAAGAGAGGTTACAATGGAATAAGAGGCAAGTCGAAGCAGATGGCATCTCGATCGCTGCAGGGCTCGGGCTGGGACTTCCTTGCGACGGAAACTCCGGATTGAAGGAACTAATGAGGGGAAACAATTCCATATTTGCTCCAAAGCACACCACCCTGGACTTCCTCGGATTGGGGATGGCAGCTGGTGGGAGCCCGAACAGCAGCCTCGCAGCGCTAATCACGTCGATCGGTGGCAGCGTAGACGTCACCACGACAACAACCGGATCATATGGAGCAGGTGACATATCCGGCAAAGACATGAACAGGAACAACTGA 1533 52.38 MPADLDNSSPASGEASVSSTGNGAPPPKSAAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKAQPQLVEKSASDSDPKGQSQKAVKPNPEPSPPPPPPSPPAASSPPQSTCVLPTVLPIQSQDQPENLLQYNEEAPATMGMSGSCSSSKSPSSNSSSSSRFASLFTSSTTSLSLQPPQPPAFTDLIHAMACSDRSSDYAPTSTTEPISLCLSSSHGASIFGAATQELRQYTPAPQPAMSATALLQKAAQIGAAASNASLLRGLGLVPSSSSAAQQERLQWNKRQVEADGISIAAGLGLGLPCDGNSGLKELMRGNNSIFAPKHTTLDFLGLGMAAGGSPNSSLAALITSIGGSVDVTTTTTGSYGAGDISGKDMNRNN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16406121 16409433 - MC01g1099 Mch1g1490 676382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1490 510 MobiDBLite consensus disorder prediction 196 244 - -
Mch1g1490 510 FunFam protein indeterminate-domain 12-like 40 108 - -
Mch1g1490 510 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Mch1g1490 510 Gene3D Classic Zinc Finger 41 108 - -
Mch1g1490 510 MobiDBLite consensus disorder prediction 198 218 - -
Mch1g1490 510 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Mch1g1490 510 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Mch1g1490 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Mch1g1490 510 SMART c2h2final6 61 83 IPR013087 -
Mch1g1490 510 SMART c2h2final6 102 132 IPR013087 -
Mch1g1490 510 SMART c2h2final6 137 157 IPR013087 -
Mch1g1490 510 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 467 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch1g1490 510 MobiDBLite consensus disorder prediction 219 239 - -
Mch1g1490 510 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 202 - -
Mch1g1490 510 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Mch1g1490 510 MobiDBLite consensus disorder prediction 269 292 - -
Mch1g1490 510 MobiDBLite consensus disorder prediction 9 25 - -
Mch1g1490 510 Gene3D Classic Zinc Finger 115 195 - -
Mch1g1490 510 MobiDBLite consensus disorder prediction 1 45 - -
Mch1g1490 510 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Mch1g1490 510 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0745 Mch-Chr10:5141856 Mch1g1490 Mch-Chr1:16406121 3.24E-160 dispersed
Mch11g0205 Mch-Chr11:1311215 Mch1g1490 Mch-Chr1:16406121 1.45E-132 dispersed
Mch1g0792 Mch-Chr1:11567958 Mch1g1490 Mch-Chr1:16406121 6.04E-108 dispersed
Mch1g1490 Mch-Chr1:16406121 Mch8g0756 Mch-Chr8:5354386 2.32E-123 dispersed
Mch1g1488 Mch-Chr1:16394687 Mch1g1490 Mch-Chr1:16406121 3.16E-237 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42766 PF00096 zf-C2H2 0.0052 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1490 K25869 - csv:101217597 745.347