Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1496 ATGGCGAATATGTGCGCCGACAGCGGCAATCTAATGGCGATTGCCCAGCAAGTCATGAAGCAGAAGCAGCAACAGGAGCAGCAGCAGCAGCATCCTCAGCAGACGCCGCAGCAGCAGCTCACTGGCCCCTGCACTTTCGCTCTCAGCCCATGGGGAAGTGCCAACCACGCTCTGTCCTGCGCTGCTCCAGATTTGGGGTTTGGGCTGGCCGGGGCGGGCTTTTCCGACCCGTTTCAGGTGTCTAGAGTGGTGGACGGTGGAGAGACCAGCTTTTCGTTTCCCAACTTGGAGCACCATTCTTCTGCCTTCAGATTCTCCGATTTTGACGGCGGCGGCGCTGCTACCGAGTTCGACTCTGACGAATGGATGGACAGTCTAATGGCTGGTGGAGATTCAACGGATAGCTCTAATCTTCCTTCTGGTTGCGACGCGTGGCAGTCTGGTACGGATTTTGCTTTCTACGGTGCCGATCCCTTTGTCCCCTGCCCGAGTCGGCTCAGTATCCCATGTTCTTCGCCGTCTGATTTTAACAGAGTAATTTTCCCTGACCCTCCTAAAAATCAAACCGCCGTTCAACCGCCGGTGGTCTCCTGGACGGGGCTGCCGCCGTCAACTCCACCGGTGGTGGTCAAGGACGCTCAACTTCCCACCCCTCCCCATGCGATCCACAAGACTGACGATAACGGCGGTTCGTCGAGCTCTGCAGAGACTGAATCAACGCCGCCGCTTCTTAAAGCCCTACTGGAATGTGCTAGAATTTCTGAATCCGAACCAGATCGAGCTGTGCAAAAGCTGATTCAACTTAAGGAATCGTCGTCGGAGCATGGAGATCCGACGGAGAGGGTGGCCTTCTACTTTCTCGAAGCCCTAGGCCGGAGGTTATCTCTGCAATCGGAGAAACGATTGGCCTCGTCCGAAAACAGTTCCGATGATTTCACAATCTCTTACAAAGCTCTCAACGATGCTTGCCCTTACTCTAAATTCGCCCATTTGACAGCGAACCAAGCCATACTCGAAATTACAGAGAACGCGAGCAGGATTCACATAATCGACTTCGGGATCGCTCAGGGAGTTCAATGGGCTGCTCTTCTGCAAGCTCTTGCAACTCGGTCCACCGGGAAACCAGCCGGAATTCGGATCTCCGGCATTCCGGCTCCGATGCTTGGGAAGTGTCCGGCGACGTCGCTGTTCGCCACTGGCAATCGACTCGCCGAGTTCGCAAAGCTTCTGGAACTGAACTTCGAATTCGAACCAATTCTCACTCCAATCGAAGAGCTAAGTGAATCGTCCTTCCGAATCGACGACGACGAAATCCTCGCCGTGAATTTCATGCTTCAATTGTACAACCTCCTGGACGAGACACCGCGCGCCGTACTGAATGTTCTGCAACTCGCGAAATCCCTGAACCCTAGAATCGTCACCCTCGGCGAATACGAAGCGAGCCTGAACCGGGTCGGCTTCTTCAATCGGTTCAAGAACGCGCTCCGGTACTACTCGGCCGTGTTCGAATCACTGGAACCAAAATTGGCCCGCGACTCAAACGAGAGGCTGCAACTAGAAAAAGTGGTGCTCGGGCGGCAGATCGCCGGCGTGGTCGGACCGGAGTCACCAAGAACCAAAACAGAACGAATGGAAGACAAAGAACAGTGGAAAATCCTAATGGAAAATTGCGGTTTCGAGCCGGTAAATCTCAGCCATTACGCCAGAAGTCAAGCCCGAATCCTTCTATGGAACTACGATTACAGCTCCTTGTATTCTTTGATCGAATCCTCACCTGGGTTTCTCTCGTTGGCGTGGAGCGAAGTACCAATTATCACAGTTTCTTCATGGCGTTGA 1836 53.76 MANMCADSGNLMAIAQQVMKQKQQQEQQQQHPQQTPQQQLTGPCTFALSPWGSANHALSCAAPDLGFGLAGAGFSDPFQVSRVVDGGETSFSFPNLEHHSSAFRFSDFDGGGAATEFDSDEWMDSLMAGGDSTDSSNLPSGCDAWQSGTDFAFYGADPFVPCPSRLSIPCSSPSDFNRVIFPDPPKNQTAVQPPVVSWTGLPPSTPPVVVKDAQLPTPPHAIHKTDDNGGSSSSAETESTPPLLKALLECARISESEPDRAVQKLIQLKESSSEHGDPTERVAFYFLEALGRRLSLQSEKRLASSENSSDDFTISYKALNDACPYSKFAHLTANQAILEITENASRIHIIDFGIAQGVQWAALLQALATRSTGKPAGIRISGIPAPMLGKCPATSLFATGNRLAEFAKLLELNFEFEPILTPIEELSESSFRIDDDEILAVNFMLQLYNLLDETPRAVLNVLQLAKSLNPRIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLEPKLARDSNERLQLEKVVLGRQIAGVVGPESPRTKTERMEDKEQWKILMENCGFEPVNLSHYARSQARILLWNYDYSSLYSLIESSPGFLSLAWSEVPIITVSSWR 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16458092 16460626 + MC01g1105 Mch1g1496 676388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1496 611 Pfam GRAS domain family 244 611 IPR005202 -
Mch1g1496 611 MobiDBLite consensus disorder prediction 216 239 - -
Mch1g1496 611 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 236 610 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch1g1496 611 ProSiteProfiles GRAS family profile. 234 611 IPR005202 -
Mch1g1496 611 MobiDBLite consensus disorder prediction 17 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1496 Mch-Chr1:16458092 Mch5g1847 Mch-Chr5:18703155 2.34E-48 dispersed
Mch10g0732 Mch-Chr10:5046836 Mch1g1496 Mch-Chr1:16458092 3.40E-253 transposed
Mch1g1033 Mch-Chr1:13339071 Mch1g1496 Mch-Chr1:16458092 4.44E-21 transposed
Mch4g1417 Mch-Chr4:17650390 Mch1g1496 Mch-Chr1:16458092 2.57E-52 transposed
Mch4g1687 Mch-Chr4:20041674 Mch1g1496 Mch-Chr1:16458092 5.83E-52 transposed
Mch4g1757 Mch-Chr4:20601417 Mch1g1496 Mch-Chr1:16458092 1.57E-39 transposed
Mch4g2611 Mch-Chr4:26368287 Mch1g1496 Mch-Chr1:16458092 9.39E-52 transposed
Mch6g1194 Mch-Chr6:9168183 Mch1g1496 Mch-Chr1:16458092 6.29E-40 transposed
Mch8g2309 Mch-Chr8:26277069 Mch1g1496 Mch-Chr1:16458092 7.20E-56 transposed
Mch9g1016 Mch-Chr9:8838642 Mch1g1496 Mch-Chr1:16458092 2.25E-40 transposed
Mch1g1496 Mch-Chr1:16458092 Mch10g0747 Mch-Chr10:5171225 3.47E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42767 PF03514 GRAS 1.20E-110 CL0063 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1496 - - - 0.0