Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1506 ATGGCGATGAGAGGTGAAGATGAGGATATAGGAACTCCTTCCCCTTTGTGTTATAATGCATCATCAAATAGGGAATCTTCAACCAAACTTCCTAATTCTGATCCACATCTAACAACTGCTGATAGAAGAAGAGATCACACAGTCCCCCAGCTTCATTTCCCTCATCACCAGAATCAAAACCATCACAAATTGAGTCTGCATCATTATTTACACAAACACACAAGAGACCATCCTGAACCAACCCCAGATCTACTCCAGACCTCCGCTACTGCCTCACCATCTGCAGTTACTCAGCCAATTGCTATCAGCAGACCGATATCTAAAGCCCCACTTGGAGCAGTTGCAAGTGATAACAGTGTTCCTTCATTGGTTCGGTACCAAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCATGTCCTTGATGGCTGTGGCGAGTTCATGCCCGGTGGAGAAGATGGAACACCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAGGAGACGAAAGACGAGCACACGACGCATGCTTTACCCAGTGGCTTTTTCATCTCCAACTCCATCAGAAACAATAGCCATGTCACGGATAGGACACCCATTCCACTCTCCCATCATCATCAATTGCCTGCAGTTCCAATTTCATCAATGATGATGGCATTTGGGGGAAGCAATGGAGCACCGGACGAGTCTTCCAGTGAAGATCTGACCATGTATCACCAGTGTAACAATGGATCCCGGGACCTGTTCAGTCAGCAGCCACAACTTATGAAGAAACGATTCCGGACAAAGTTCACCCAGGGACAGAAGGACAAGATGGTAGAGTTTGCTGAGAAATTGGGGTGGAAGATACAGAAACATGATGAACTGGAAGTGCAACAGTTCTGCGCTGAGGTTGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCCATGAAGAAGAAACAAATG 984 47.15 MAMRGEDEDIGTPSPLCYNASSNRESSTKLPNSDPHLTTADRRRDHTVPQLHFPHHQNQNHHKLSLHHYLHKHTRDHPEPTPDLLQTSATASPSAVTQPIAISRPISKAPLGAVASDNSVPSLVRYQECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKETKDEHTTHALPSGFFISNSIRNNSHVTDRTPIPLSHHHQLPAVPISSMMMAFGGSNGAPDESSSEDLTMYHQCNNGSRDLFSQQPQLMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16506922 16507905 + MC01g1113 Mch1g1506 676398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1506 328 Gene3D - 251 325 - -
Mch1g1506 328 NCBIfam homeobox domain, ZF-HD class 264 321 IPR006455 -
Mch1g1506 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 125 175 IPR006456 -
Mch1g1506 328 SUPERFAMILY Homeodomain-like 261 325 IPR009057 -
Mch1g1506 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 83 322 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch1g1506 328 MobiDBLite consensus disorder prediction 70 92 - -
Mch1g1506 328 MobiDBLite consensus disorder prediction 15 35 - -
Mch1g1506 328 Pfam ZF-HD protein dimerisation region 124 176 IPR006456 -
Mch1g1506 328 FunFam Zinc-finger homeodomain protein 2 253 325 - -
Mch1g1506 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 126 175 IPR006456 -
Mch1g1506 328 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1506 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1506 Mch-Chr1:16506922 Mch8g0250 Mch-Chr8:1661113 1.87E-43 dispersed
Mch1g1506 Mch-Chr1:16506922 Mch8g0775 Mch-Chr8:5475107 4.76E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42769 PF04770 ZF-HD_dimer 1.60E-30 No_clan Mch TF