Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1506 ATGGCGATGAGAGGTGAAGATGAGGATATAGGAACTCCTTCCCCTTTGTGTTATAATGCATCATCAAATAGGGAATCTTCAACCAAACTTCCTAATTCTGATCCACATCTAACAACTGCTGATAGAAGAAGAGATCACACAGTCCCCCAGCTTCATTTCCCTCATCACCAGAATCAAAACCATCACAAATTGAGTCTGCATCATTATTTACACAAACACACAAGAGACCATCCTGAACCAACCCCAGATCTACTCCAGACCTCCGCTACTGCCTCACCATCTGCAGTTACTCAGCCAATTGCTATCAGCAGACCGATATCTAAAGCCCCACTTGGAGCAGTTGCAAGTGATAACAGTGTTCCTTCATTGGTTCGGTACCAAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCATGTCCTTGATGGCTGTGGCGAGTTCATGCCCGGTGGAGAAGATGGAACACCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAGGAGACGAAAGACGAGCACACGACGCATGCTTTACCCAGTGGCTTTTTCATCTCCAACTCCATCAGAAACAATAGCCATGTCACGGATAGGACACCCATTCCACTCTCCCATCATCATCAATTGCCTGCAGTTCCAATTTCATCAATGATGATGGCATTTGGGGGAAGCAATGGAGCACCGGACGAGTCTTCCAGTGAAGATCTGACCATGTATCACCAGTGTAACAATGGATCCCGGGACCTGTTCAGTCAGCAGCCACAACTTATGAAGAAACGATTCCGGACAAAGTTCACCCAGGGACAGAAGGACAAGATGGTAGAGTTTGCTGAGAAATTGGGGTGGAAGATACAGAAACATGATGAACTGGAAGTGCAACAGTTCTGCGCTGAGGTTGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCCATGAAGAAGAAACAAATG 984 47.15 MAMRGEDEDIGTPSPLCYNASSNRESSTKLPNSDPHLTTADRRRDHTVPQLHFPHHQNQNHHKLSLHHYLHKHTRDHPEPTPDLLQTSATASPSAVTQPIAISRPISKAPLGAVASDNSVPSLVRYQECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKETKDEHTTHALPSGFFISNSIRNNSHVTDRTPIPLSHHHQLPAVPISSMMMAFGGSNGAPDESSSEDLTMYHQCNNGSRDLFSQQPQLMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16506922 16507905 + MC01g1113 Mch1g1506 676398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1506 328 Gene3D - 251 325 - -
Mch1g1506 328 NCBIfam homeobox domain, ZF-HD class 264 321 IPR006455 -
Mch1g1506 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 125 175 IPR006456 -
Mch1g1506 328 SUPERFAMILY Homeodomain-like 261 325 IPR009057 -
Mch1g1506 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 83 322 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch1g1506 328 MobiDBLite consensus disorder prediction 70 92 - -
Mch1g1506 328 MobiDBLite consensus disorder prediction 15 35 - -
Mch1g1506 328 Pfam ZF-HD protein dimerisation region 124 176 IPR006456 -
Mch1g1506 328 FunFam Zinc-finger homeodomain protein 2 253 325 - -
Mch1g1506 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 126 175 IPR006456 -
Mch1g1506 328 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1506 Mch-Chr1:16506922 Mch8g0250 Mch-Chr8:1661113 1.87E-43 dispersed
Mch1g1506 Mch-Chr1:16506922 Mch8g0775 Mch-Chr8:5475107 4.76E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42769 PF04770 ZF-HD_dimer 1.60E-30 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1506 - - - 0.0