Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1508 ATGTCGTTCAAAAGCTTTGTTCGCGAACTAAGGGAGATGAAAGATGGACTTGGGATCAAACCGAAGCGAGGGGGAGAAGGGAGGAACTGGCGAAGTCGCACGAGGTCACATATTGCACCTGATGAAGTGCTGCCTCAGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGTCGAACTTGCCTCCTGAGTTGCTTTTGGACATAATCCAAAGAGTAGAAGAGAGCGAAACCTCGTGGCCTGCTCGGGCTGTTGTCGTTTTTTGTGCTTCAGTGTGCAGGTCATGGAGGAACATTACAAAGGAGGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGGGACTCTCCGATTCAGTGCTATGTTAGAAGGCACAGACCAACTTCAACCTATCTTCTATACTCCGGACTCGTGCCTTGTAGTGATAAACTGTTATTAGCGGCCAAGAGAATAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCGGATGATTTTTCTTGGGCCTGCAGTACCTATGTTGGCAAATTAAGGCAAGCGTCCAACTTTTTTGGCACAAAGTTCACCATGTATGATAGCCAACCACCAGTTCTCGCAGCATCACAACCAAATAACCAATCGAATCGTAGGTTTCATGCGAAACAAGTGTCTCCAAGAATGTCAGCTTGTAACTACACTATAGGAGCAATCTCTTACGAGCTTAATGTTCTACGGACTAGAGGGCCCAGAAGAATGCACTGTGTTATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAAGAAGTGCACCAACACCAACATCGTTCACATCCTGTTTCGATGACCATCACCCCCCTCTACCGGGTTCCAAGGGGAAGGAGCCAGACACGGATTTCAGTTCCACAAGCATTTCAGGGGCACCAGTTCAAGAATTGGGAGAATCCTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAGCTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACTGTGGCTTCTGTAAAGAATTTTCAACTTGTGGCCGATGTAGATCCAGCCCTCAATATGTCAGTTGAAGAGCAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGGAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACCTTCCAAGCATTCGTGATCTGCTTGAGCAGCTTCGACACCAAACCAGCATGTGAA 1242 47.67 MSFKSFVRELREMKDGLGIKPKRGGEGRNWRSRTRSHIAPDEVLPQPPQPEAIQQGQWSNLPPELLLDIIQRVEESETSWPARAVVVFCASVCRSWRNITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRPTSTYLLYSGLVPCSDKLLLAAKRIRRATGTDFVISLVADDFSWACSTYVGKLRQASNFFGTKFTMYDSQPPVLAASQPNNQSNRRFHAKQVSPRMSACNYTIGAISYELNVLRTRGPRRMHCVMHSIPASCIQQGRSAPTPTSFTSCFDDHHPPLPGSKGKEPDTDFSSTSISGAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALNMSVEEQEKIILQFGKIGKDIFTMDYRYPLSTFQAFVICLSSFDTKPACE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16517309 16519093 - MC01g1115 Mch1g1508 676400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1508 414 MobiDBLite consensus disorder prediction 280 311 - -
Mch1g1508 414 Gene3D - 51 104 - -
Mch1g1508 414 SUPERFAMILY Tubby C-terminal domain-like 107 414 IPR025659 -
Mch1g1508 414 SUPERFAMILY F-box domain 51 102 IPR036047 GO:0005515(InterPro)
Mch1g1508 414 Pfam F-box-like 58 101 IPR001810 GO:0005515(InterPro)
Mch1g1508 414 MobiDBLite consensus disorder prediction 17 55 - -
Mch1g1508 414 PANTHER TUBBY-RELATED 44 413 - -
Mch1g1508 414 Pfam Tub family 119 409 IPR000007 -
Mch1g1508 414 MobiDBLite consensus disorder prediction 17 38 - -
Mch1g1508 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Mch1g1508 414 Gene3D Tubby Protein; Chain A 116 414 IPR025659 -
Mch1g1508 414 CDD F-box_AtTLP-like 58 102 - -
Mch1g1508 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Mch1g1508 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mch1g1508 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Mch1g1508 414 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Mch1g1508 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Mch1g1508 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Mch1g1508 414 PRINTS Tubby superfamily signature 188 212 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1508 Mch-Chr1:16517309 Mch4g1886 Mch-Chr4:21539841 1.26E-142 dispersed
Mch1g1508 Mch-Chr1:16517309 Mch10g0790 Mch-Chr10:5496465 1.90E-220 wgd
Mch1g1508 Mch-Chr1:16517309 Mch11g0176 Mch-Chr11:1149384 1.31E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42770 PF01167 Tub 1.30E-99 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1508 K19600 - csv:101221704 726.472