Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1511 CACGTCACAAGAGTGAGAAAAAAAAACCCTTCGAGCTTCGGGCACTCAATCTGGCTTTTCCGGGAAATTCTCTCTCCCGACTCCGGCCAGAAATTTCGGAAACTGGCCGTGTCGTTGGCCGGAAAATTTGGAGGAGCACTTAATCTTCTCAAATTTGTTACCGGAAGTTCCACCATGGAAGCTCCGGTCAGGGCATTCCGCCCCTATGTTCTCAATCGCCGCCTCTTCTCCAACACACTTCCTCCTTCGCGCCTCCTTTCATCTTCCGAATCCAATCGGAGCGCAATTTTCCGGCAATCTTCAACCTATTTCCCTCCCACTCCTCAAAACGGATCGGTTTCCAAAATCTCGCTCTCAATCAATCTTTCTCACGGCTGCTCCTCGCCCTTTGGATCTTCTTCCTCTTCTCTCGGCTCCAGCCCTTCTGATTTTCTCTCTTCTCTTCCCTCATTACAATCTCTAGGCTCTCAATTCGCGCCTAATCATTTCAATTCGTCTCTATCCGACCCAAACGGCAGCGCCTGGACATGGAATCGAGCTTCGGAGAGTGCAATCGGTGGAAACGTGGGGGTTTTGGGGGGCGAAAAGCGAGCGGCAACCGTCGTGTTGCTAGGTTGGCTCGGGGCGAAGACTAAGCATCTGAGGAGGTACGTGGAGTGGTACAATGCTAGGGGTATCAACGCCCTGACGTTTGTGGTTGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAGAGTTGAGCAGCGGATTTCGGATTTGGCGGAGGAGCTCATTTCTTGGTTATCGGACGGGAAGGAGAGTGATAAAGATCGGTGCCTGATTTTCCACACTTTTAGCAACACGGGATGGTTTGTATATGGATCCATTCTTGAAATTTTGCTGGGGCGGAAGGATTTGTTAGAGAAGATCAAAGGGTGCATTGTTGATTCTGGAGGAGGTGAGCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCGTCTGCATCTACTATGGTTAATGGAGAGGAAATTAAGGAAGCACAAAAAGAAGTGAGTGAGCCCAAAACTATAGACAAGAAACCTCTTGTATTGGAAACCTTTACTCTATCAACACTGGAGAAGTTTTTCTCAGTCGCTCTGAAGTTGCCATATGTCGACGAGAGATTGAAGAAGCTTGTTTCAGTTCTTACAGAGAACCAGCCCTTGTATCCTGAGCTTTATCTGTACAGCGCAGGGGACAAAGTTGTGCCATTCGAGTCGATCGAGCTACTTATCGAGAAGAGGAAGAAGACAGGAAGGAAGGTTTTGTCATACAACTTCGTATTCTTTTTGCAGAAGATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAGCAGGCGCAGAGGGACGGAGACTCCGCCGCTGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAACCCTACAGAAGAACAGAACCTGTCTCTGTTTTTCCGACAAGTCGACGAAATCAAGACCGAAATGGAAGAGACCACCAATCTCTTAACCGATCTTCGGAAACTGAACGAAGAGGCGAAATCGACTCACAACGCCAAAATCCTCCGCGGCCTGAGAGACCGAATCGACTCCGATATGGTCTCGATCCTCCGAAGGGCAAAACTGCTCAGAGAGAAATTGGCCTCTCTCGACCAATCCAACGCCGCGAACCGCCTGATCTCCGTCGCGTACGGCGAAGGCACCACCGTCGATCGGACGAGAAGCTCCGTCACGAGCGGATTGAGAGTGAAACTCCGAGAGATGATGAACGATTTCCAGTTGTTGCGGGAGAAAGTGGTGGCGGACCACAAGGAGGATCTGAGGAGAAGATATTTCGCGGCGATCGGGGAGCAGCCGAGCGAAGAAGTGATGGAGAAGATAATGTCCGGGAGTGTGAAACTGGAATCGTTTGGGGGAAAATTAAGAACAGAGTCCGAGTTGGGGGAGCGAGTCAGGCACGAGTCGGTGATGGATATTGAGAAGAGTTTGAATAAGCTTCACCAGGTGTTTCTGGACATGGCGATTTTGGTGGAGAGTCAGGGGGAGAAGATGGAGGATATTGAAGAGAATGTGGCGAGAGGTGGGAAGCTCATCAATGGCGGAACTTGCAGCCTTTACTATGCGAATCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGGTGTGATTTTCGTTATATTGCTTGTTTGCATCATTGCTATGTTGGTT 2256 49.11 HVTRVRKKNPSSFGHSIWLFREILSPDSGQKFRKLAVSLAGKFGGALNLLKFVTGSSTMEAPVRAFRPYVLNRRLFSNTLPPSRLLSSSESNRSAIFRQSSTYFPPTPQNGSVSKISLSINLSHGCSSPFGSSSSSLGSSPSDFLSSLPSLQSLGSQFAPNHFNSSLSDPNGSAWTWNRASESAIGGNVGVLGGEKRAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRRVEQRISDLAEELISWLSDGKESDKDRCLIFHTFSNTGWFVYGSILEILLGRKDLLEKIKGCIVDSGGGEPLNPQVWAAGFSAAILKKNSSSASTMVNGEEIKEAQKEVSEPKTIDKKPLVLETFTLSTLEKFFSVALKLPYVDERLKKLVSVLTENQPLYPELYLYSAGDKVVPFESIELLIEKRKKTGRKVLSYNFVFFLQKMNDLMTKSFLSYVELKKQAQRDGDSAAGFDIESGGQELNPTEEQNLSLFFRQVDEIKTEMEETTNLLTDLRKLNEEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLREKLASLDQSNAANRLISVAYGEGTTVDRTRSSVTSGLRVKLREMMNDFQLLREKVVADHKEDLRRRYFAAIGEQPSEEVMEKIMSGSVKLESFGGKLRTESELGERVRHESVMDIEKSLNKLHQVFLDMAILVESQGEKMEDIEENVARGGKLINGGTCSLYYANQMKRKNKKWVYWVWGVIFVILLVCIIAMLV 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16531602 16537023 - MC01g1118 Mch1g1511 676403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1511 752 PANTHER UNCHARACTERIZED 150 444 IPR008547 -
Mch1g1511 752 SUPERFAMILY t-snare proteins 494 706 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch1g1511 752 Gene3D - 657 752 - -
Mch1g1511 752 CDD SynN 498 644 IPR006011 GO:0016020(InterPro)
Mch1g1511 752 Pfam Syntaxin 498 694 IPR006011 GO:0016020(InterPro)
Mch1g1511 752 SMART tSNARE_6 654 721 IPR000727 -
Mch1g1511 752 CDD SNARE_syntaxin1-like 665 704 - -
Mch1g1511 752 Coils Coil 502 529 - -
Mch1g1511 752 Gene3D - 490 622 - -
Mch1g1511 752 FunFam Syntaxin 132 653 752 - -
Mch1g1511 752 SMART SynN_4 490 617 IPR006011 GO:0016020(InterPro)
Mch1g1511 752 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 659 721 IPR000727 -
Mch1g1511 752 Pfam Eukaryotic protein of unknown function (DUF829) 200 443 IPR008547 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1511 Mch-Chr1:16531602 Mch4g1629 Mch-Chr4:19490956 6.62E-61 dispersed
Mch1g1511 Mch-Chr1:16531602 Mch5g1533 Mch-Chr5:16307349 2.52E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1511 K08486 - csv:101222646 551.977