Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1543 ATGGCCAACCTTTTGAGCTGTGTCTTTGTTCTTTCCTTGCTTGCTTTTGCTCCACTTTGTCTGTGTAGTAGAAATGGTGGCTATGGGTCTCTGTTCCCTCAGTTTTATGACCATTCCTGCCCCAAAGCTAAAGACATAGTGAAGTCCATTCTGGCAAAGGCTTTTGCAAGAGAAGCTCGTATTGCTGCTTCTATCCTTAGACTTCACTTCCACGACTGTTTTGTTCAGGGGTGTGATGCATCTTTACTATTGGATAGTAGTGGAAGCATTCAGAGTGAAAAGAACTCGAACCCAAATAGGAACTCTGCCAGAGGGTTTGAGGTGATTGATGAGATCAAATCTGCACTGGAGAGAGAGTGCCCACAAACTGTTTCTTGTGCTGATATCTTGGCTCTGGCTGCAAGAGACTCCACTGTCATTACGGGTGGACCCTATTGGGAGGTCCCATTGGGGAGGAAGGACTCCAGAAGTGCAAGTTTGAGTGGGTCCAACAACAACATTCCAGCTCCAAATAACACTTTCCAAACCATTCTCTCAAGATTCCAAAACCAAGGCCTTGACATCGTTGATCTTGTTGCCTTATCTGGAGGGCACACCATAGGAAATTCGAGGTGCACCAGCTTCAGGCAGAGGCTGTACAACCAGAACGGCAACGGGCAACCGGACAAGACCCTTCCGCAGCCGTATGCGGCGGAGCTCCGGGGGCGGTGCCCGAGATCAGGCGGAGACAACAACCTGTTTTTTCTGGACTTGTTCAGCCCGACAAAGTTCGACAACAGCTATTTCAGGAACATAGTTGCTTACAAAGGGCTCCTCAACTCCGACCAAGTTCTCCTCACCGGAAACGACATGTCGGCTGCTTTGGTTAAGAAATATGGAGAAGACAGCGAGGCGTTCTTCCAGCAATTCGCCAAATCTATGATCAAGATGAGCAATATCTCGCCGTTGACCGGCTCCACTGGAGAGATCAGAAAAACTTGCAGGAAAGTCAAC 993 48.54 MANLLSCVFVLSLLAFAPLCLCSRNGGYGSLFPQFYDHSCPKAKDIVKSILAKAFAREARIAASILRLHFHDCFVQGCDASLLLDSSGSIQSEKNSNPNRNSARGFEVIDEIKSALERECPQTVSCADILALAARDSTVITGGPYWEVPLGRKDSRSASLSGSNNNIPAPNNTFQTILSRFQNQGLDIVDLVALSGGHTIGNSRCTSFRQRLYNQNGNGQPDKTLPQPYAAELRGRCPRSGGDNNLFFLDLFSPTKFDNSYFRNIVAYKGLLNSDQVLLTGNDMSAALVKKYGEDSEAFFQQFAKSMIKMSNISPLTGSTGEIRKTCRKVN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16768075 16769949 + MC01g1143 Mch1g1543 676435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1543 331 PANTHER PEROXIDASE 72-RELATED 13 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 CDD secretory_peroxidase 31 330 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Mch1g1543 331 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Mch1g1543 331 Gene3D - 35 331 - -
Mch1g1543 331 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 Pfam Peroxidase 47 294 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 ProSiteProfiles Plant heme peroxidase family profile. 30 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 FunFam Peroxidase 34 175 - -
Mch1g1543 331 Gene3D Peroxidase, domain 2 168 311 - -
Mch1g1543 331 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 SUPERFAMILY Heme-dependent peroxidases 31 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1543 331 FunFam Peroxidase 168 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0676 Mch-Chr10:4660666 Mch1g1543 Mch-Chr1:16768075 4.84E-92 dispersed
Mch1g1543 Mch-Chr1:16768075 Mch4g2473 Mch-Chr4:25560499 3.16E-107 dispersed
Mch6g2632 Mch-Chr6:28090963 Mch1g1543 Mch-Chr1:16768075 1.16E-86 transposed
Mch9g2030 Mch-Chr9:21534314 Mch1g1543 Mch-Chr1:16768075 5.79E-93 transposed
Mch1g1543 Mch-Chr1:16768075 Mch10g0764 Mch-Chr10:5342204 1.37E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1543 K00430 - csv:101204648 594.734