Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1548 | ATGAACAAGATGAGGAATATTGATAACAAGGATGGGAGAATTCCAAAAGGGAACCTGGGTTGGCCTTTCATTGGAGAAACTCTCCAATTCATTGCTTCTGGCTACTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTATGGGGAGGTGTTTAAAACAAACATATTGGGAACGCCCATCATAGTGTCGACTGATTCAGAGGTGAACAAAGTTGTTTTACAGAACCATGGCAACATATTCATCCCAGCTTACCCAAAATCAATCACTGAATTACTGGGTCCATTCTCAATTCTTCAAATGAATGGAAATGTTCAGAGAAAAGTCCATTCAATCATTGGAGCCTTCCTCAGGTCCCCACTCCTCAAATCCCGAATCACCAAAGACATTCACAACACCGTTCGTCTCAGCCTCGCTAATTGGAACCCCTCCCACTTGGTTTATGTCCAAACCCAAACCAAACAGATCACATTCGAAGTTTTGGTGAAGGTGTTGATGAGTGTGGGTCCGGGTGAAGATTTGAAGATTTTGAAAAGGGAATTCGAAGAGTTCATCAAAGGCTTGATTTGCATACCCCTTAAGCTTCCCGGAACTCGGCTCTATAAATCCTTGAAGGCGAGAGAGAAGCTGTTGAAAATAGTGAGGAAAATAGTGGAAGAGAAGAAATGGGCGATGGCGGAGAAGGCGGCTCCGGCGAAGGACGCGGTGGAGGTGCTGTTGGAGGACCACGAGGGGAGCCAAGGACTGCCGTTGGATTTCATCAGCAGCCACGTCATAGAGCTGATGATCCCGGGGGAGGAGACGGTGCCGATGGCGATGACGCTGGCCGTCAAATTTCTGAGTGACAGCCCGGTGGCTCTAGCCCAAACGATGGAGGAGAATAAGGAACTGAAGAAGCAGAAGGATAGTTCTGGCGAGGAGTATACGTGGACAGATTTCATGTCTCTGCAATTCACTCAAAATGTAATTAGTGAAACATTAAGAATGGCCAATATCATCAATGGGGTTTGGAGGAAAGCTCAAAAAGACGTGGAAATCAAAGGATATTTAATACCACAAGGATGGTGCGTTTTGGCATCTTTTATATCTGTTCATATGGATGAAGAAAATTATGCAAATCCACATCAGTTTAATCCATGGAGATGGGAGGAAATTGGGTCTGCAACTAACAACCATAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCCGGCATTGAACTCGCGAGGCTCGAAATCTCGATCTTCCTTCATTGCCTTGTCACCACCTACAAGAATTCTAGTTTTACTTTACATGGAGCTCTCTCTACCATTCTGAATTATGATTCTTGTTCGTGCGTCGCCATCTTTTTGACAGTTCAAGGGGTCCTTCCTTGTCCATTGAATACTGCATTCATTGTACCCAACGCCATGTATAAAGTTTTAACATTTTGTGGCGAGGAACTTGCTGAGTACTAG | 1467 | 44.92 | MNKMRNIDNKDGRIPKGNLGWPFIGETLQFIASGYSSRPVTFMDKRKSLYGEVFKTNILGTPIIVSTDSEVNKVVLQNHGNIFIPAYPKSITELLGPFSILQMNGNVQRKVHSIIGAFLRSPLLKSRITKDIHNTVRLSLANWNPSHLVYVQTQTKQITFEVLVKVLMSVGPGEDLKILKREFEEFIKGLICIPLKLPGTRLYKSLKAREKLLKIVRKIVEEKKWAMAEKAAPAKDAVEVLLEDHEGSQGLPLDFISSHVIELMIPGEETVPMAMTLAVKFLSDSPVALAQTMEENKELKKQKDSSGEEYTWTDFMSLQFTQNVISETLRMANIINGVWRKAQKDVEIKGYLIPQGWCVLASFISVHMDEENYANPHQFNPWRWEEIGSATNNHNFTPFGGGQRLCPGIELARLEISIFLHCLVTTYKNSSFTLHGALSTILNYDSCSCVAIFLTVQGVLPCPLNTAFIVPNAMYKVLTFCGEELAEY | 488 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16785275 | 16789641 | + | MC01g_new0402 | Mch1g1548 | 676440 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1548 | 488 | PANTHER | CYTOCHROME P450 26 | 13 | 427 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Mch1g1548 | 488 | FunFam | 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 | 4 | 436 | - | - | |
| Mch1g1548 | 488 | CDD | CYP90-like | 46 | 428 | - | - | |
| Mch1g1548 | 488 | SUPERFAMILY | Cytochrome P450 | 12 | 428 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 399 | 408 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Mch1g1548 | 488 | Coils | Coil | 289 | 309 | - | - | |
| Mch1g1548 | 488 | PRINTS | E-class P450 group IV signature | 41 | 64 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | E-class P450 group IV signature | 390 | 406 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | E-class P450 group IV signature | 367 | 385 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | E-class P450 group IV signature | 406 | 424 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | E-class P450 group IV signature | 318 | 334 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | Pfam | Cytochrome P450 | 15 | 428 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | Gene3D | Cytochrome P450 | 4 | 438 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | P450 superfamily signature | 406 | 417 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | P450 superfamily signature | 323 | 334 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | P450 superfamily signature | 266 | 283 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1548 | 488 | PRINTS | P450 superfamily signature | 397 | 406 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1531 | Mch-Chr1:16689224 | Mch1g1548 | Mch-Chr1:16785275 | 6.68E-44 | dispersed | |
| Mch1g1548 | Mch-Chr1:16785275 | Mch8g1252 | Mch-Chr8:9026890 | 1.62E-156 | dispersed | |
| Mch1g1548 | Mch-Chr1:16785275 | Mch9g0259 | Mch-Chr9:1937654 | 2.47E-163 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g1548 | K12637 | - | csv:101203911 | 701.434 |