Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1555 ATGTCTGGGTTTTTCTCTCTAGCTGGAGGAAGAGGAGCTGGTAGCGACGACCCCCACCGACCCAACGAAATTATCCACCCAGACACCTTGTTTTGGTACAAGGGCGGCGCCGCCAACAGCAACAGCAACAGCCTCAACCTCGACCTATGGCAGCAGCAGCAGCAGCAAGAGCAAGCCCTCTTCCAAACCCAATCACGCAACAATCCCTACTCCTCCTCGGGCGTGGTGGGTCCTCGACGCGCCTCCGATGAGTCGTCGTCGAGATCGCCCAATTTAATGATGATCACATCCGGATCCGGATCGGGATCGGGGGGGATCAGCTGCCAAGACTGCGGCAACCAGGCGAAGAAGGACTGCGTCCACATGCGGTGCCGGACCTGCTGCAAAAGCCGAGGCTTCGATTGCCAAACCCATGTCAAAAGCACATGGGTTCCTGCCGCCAAACGCCGCGAGCGCCAACACAAGCTCGCCGCCTTGCAACACCTTCACACCACCAACCCCAAACGCCCAGATTATAACCCCACTTCCTCCTCTGCAGGGTTGGAAATTGGGAATTTTCCGGCGGAGTTGAACTCCCCGGCTGTATTCCGTTGCGTCCGCGTCAGCTCCACCGACGAAACCGACGAACAATACGCGTATCAGACGGCGGTGAATATCGGAGGACGTGTTTTCAAGGGAATTCTATACGACCAAGGACCCGAAAGTAATTATATGCCCGGCGAGACCTCGTCCGGCGGCGGTGGCAGTAGTAGTGGAGTGCAGCCGCTGAACTTCATCTCCGGCGCCGGCGATGCCACCACGGCCAGCGGTGGCTCCTCCGCTGCCTTGCCCTTGCTTGATCCTTCCTTGTATTCGACGCCGCTCAACAGCTATATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 912 57.79 MSGFFSLAGGRGAGSDDPHRPNEIIHPDTLFWYKGGAANSNSNSLNLDLWQQQQQQEQALFQTQSRNNPYSSSGVVGPRRASDESSSRSPNLMMITSGSGSGSGGISCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQHKLAALQHLHTTNPKRPDYNPTSSSAGLEIGNFPAELNSPAVFRCVRVSSTDETDEQYAYQTAVNIGGRVFKGILYDQGPESNYMPGETSSGGGGSSSGVQPLNFISGAGDATTASGGSSAALPLLDPSLYSTPLNSYMAGTQFFLPPRS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16831414 16833370 - MC01g1150 Mch1g1555 676447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1555 303 MobiDBLite consensus disorder prediction 1 22 - -
Mch1g1555 303 NCBIfam LRP1 C-terminal domain 186 233 IPR006511 -
Mch1g1555 303 NCBIfam putative zinc finger domain, LRP1 type 107 149 IPR006510 -
Mch1g1555 303 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 297 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Mch1g1555 303 MobiDBLite consensus disorder prediction 234 258 - -
Mch1g1555 303 MobiDBLite consensus disorder prediction 236 258 - -
Mch1g1555 303 MobiDBLite consensus disorder prediction 56 91 - -
Mch1g1555 303 Pfam Domain of unknown function (DUF702) 105 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1555 Mch-Chr1:16831414 Mch9g1733 Mch-Chr9:19295882 3.50E-17 dispersed
Mch2g0175 Mch-Chr2:1332546 Mch1g1555 Mch-Chr1:16831414 7.19E-38 transposed
Mch6g1241 Mch-Chr6:9741395 Mch1g1555 Mch-Chr1:16831414 9.64E-39 transposed
Mch1g1555 Mch-Chr1:16831414 Mch10g0757 Mch-Chr10:5285591 1.76E-75 wgd
Mch1g1555 Mch-Chr1:16831414 Mch11g0151 Mch-Chr11:953358 3.59E-66 wgd
Mch1g1555 Mch-Chr1:16831414 Mch8g0817 Mch-Chr8:5797384 8.54E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42772 PF05142 DUF702 3.00E-57 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1555 K27807 - csv:101207689 380.563