Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1560 ATGGAGGAGGGAGATTTGAAGATGCGCGTTGTGAAGGACACGAGTTTCAAATCCAGCTCCAAAGTTTATTTGGACGAATTTTGGTCTCCCAGTTCGCAAATCCCCCCATCCTCCTCCTCCTCCGATAACTTTTTTGTGGACCAACTCCTAAATTTTTCAAATGAAGAAGATGGGTTTATTGAGGAAGAGGAAGAAGAAGAAAAACCGAAACACTCCATCTCTGTTTCTGCTCCCCTGCAAGAGAGCGACGAAAACTCCAACCACAGCTCCACTAATTCCTCCGAAGACGCCTTCTGGTCTGTTTCTTCAGGAGATTTCGAAGACCTCGAATGGCTCTCCCATCTCGTTTCCGATTCCTCCCAAGAATACTCCGCCGCCGCCGCCGCCGCCGCACCCTGTTCTGTATTTTTCCCCGAAACCACCCACCAGCCCCTCCCCAAATTTGGGTCTAATCTCAAGACCCAATTTCCCTCAAAGCCCAGAAGCAAGCGAGCCAAAGTCTCCGGCCGAGTCTGGTCCACGAGTTTAATAACTTCCTCTTCATCGGCGAAGAAACCGAGGAAGAGTTCGACGCCGGAGGGTTCCGGCAGGGTCCAGCCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAGAAAACCCCACAGTGGCGAGCCGGCCCGCTCGGAGCAAAGACTCTGTGCAACGCGTGCGGCGTTCGGTTCAAGTCGGGCCGGCTGTTCCCGGAATATAGACCGGCGTGCAGCCCGAGTTTCTCGAGCGAACTTCACTCGAACCACCACCGGAAAGTTCTGGAGATGCGACGTCAGAAAGAAACCGAGAAACACCCATCGGGTCCGGGCCCGACATTAGGAGTAGTGTAA 858 54.08 MEEGDLKMRVVKDTSFKSSSKVYLDEFWSPSSQIPPSSSSSDNFFVDQLLNFSNEEDGFIEEEEEEEKPKHSISVSAPLQESDENSNHSSTNSSEDAFWSVSSGDFEDLEWLSHLVSDSSQEYSAAAAAAAPCSVFFPETTHQPLPKFGSNLKTQFPSKPRSKRAKVSGRVWSTSLITSSSSAKKPRKSSTPEGSGRVQPPRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPSFSSELHSNHHRKVLEMRRQKETEKHPSGPGPTLGVV 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16857778 16859403 + MC01g_new0408 Mch1g1560 676452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1560 285 Pfam GATA zinc finger 204 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 CDD ZnF_GATA 203 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 MobiDBLite consensus disorder prediction 147 207 - -
Mch1g1560 285 Gene3D - 195 274 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch1g1560 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 260 - -
Mch1g1560 285 MobiDBLite consensus disorder prediction 168 196 - -
Mch1g1560 285 ProSitePatterns GATA-type zinc finger domain. 204 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 MobiDBLite consensus disorder prediction 75 97 - -
Mch1g1560 285 ProSiteProfiles GATA-type zinc finger domain profile. 198 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 FunFam GATA transcription factor 194 277 - -
Mch1g1560 285 MobiDBLite consensus disorder prediction 266 285 - -
Mch1g1560 285 PIRSF Txn_fac_GATA_plant 11 277 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch1g1560 285 MobiDBLite consensus disorder prediction 56 97 - -
Mch1g1560 285 PANTHER GATA TRANSCRIPTION FACTOR 43 270 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Mch1g1560 285 SMART GATA_3 198 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1560 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1560 Mch-Chr1:16857778 Mch9g0313 Mch-Chr9:2348359 5.40E-41 dispersed
Mch1g1560 Mch-Chr1:16857778 Mch10g0751 Mch-Chr10:5208041 3.87E-49 wgd
Mch1g1560 Mch-Chr1:16857778 Mch2g1067 Mch-Chr2:7179548 7.82E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0323 . 115 399 C2C2-Gata Transcription Factor Family AT5G25830 55.1 6.5e-71 264.6
Mch11g0766 . 83 352 C2C2-Gata Transcription Factor Family AT5G25830 52.0 1.7e-66 250.0
Mch8g1192 . 68 241 C2C2-Gata Transcription Factor Family AT2G45050 50.2 4.1e-44 175.3
Mch10g0751 . 27 316 C2C2-Gata Transcription Factor Family AT5G66320 51.0 7.1e-65 244.6
Mch1g1560 . 104 269 C2C2-Gata Transcription Factor Family AT4G36240 52.8 4.3e-40 161.8
Mch11g0766 . 71 351 C2C2-Gata Transcription Factor Family AT4G32890 51.0 6.9e-59 224.6
Mch10g1588 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.7 5.8e-135 478.0
Mch6g2117 . 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.4 3.2e-133 472.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42773 PF00320 GATA 1.40E-16 CL0167 Mch TF