Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1560 ATGGAGGAGGGAGATTTGAAGATGCGCGTTGTGAAGGACACGAGTTTCAAATCCAGCTCCAAAGTTTATTTGGACGAATTTTGGTCTCCCAGTTCGCAAATCCCCCCATCCTCCTCCTCCTCCGATAACTTTTTTGTGGACCAACTCCTAAATTTTTCAAATGAAGAAGATGGGTTTATTGAGGAAGAGGAAGAAGAAGAAAAACCGAAACACTCCATCTCTGTTTCTGCTCCCCTGCAAGAGAGCGACGAAAACTCCAACCACAGCTCCACTAATTCCTCCGAAGACGCCTTCTGGTCTGTTTCTTCAGGAGATTTCGAAGACCTCGAATGGCTCTCCCATCTCGTTTCCGATTCCTCCCAAGAATACTCCGCCGCCGCCGCCGCCGCCGCACCCTGTTCTGTATTTTTCCCCGAAACCACCCACCAGCCCCTCCCCAAATTTGGGTCTAATCTCAAGACCCAATTTCCCTCAAAGCCCAGAAGCAAGCGAGCCAAAGTCTCCGGCCGAGTCTGGTCCACGAGTTTAATAACTTCCTCTTCATCGGCGAAGAAACCGAGGAAGAGTTCGACGCCGGAGGGTTCCGGCAGGGTCCAGCCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAGAAAACCCCACAGTGGCGAGCCGGCCCGCTCGGAGCAAAGACTCTGTGCAACGCGTGCGGCGTTCGGTTCAAGTCGGGCCGGCTGTTCCCGGAATATAGACCGGCGTGCAGCCCGAGTTTCTCGAGCGAACTTCACTCGAACCACCACCGGAAAGTTCTGGAGATGCGACGTCAGAAAGAAACCGAGAAACACCCATCGGGTCCGGGCCCGACATTAGGAGTAGTGTAA 858 54.08 MEEGDLKMRVVKDTSFKSSSKVYLDEFWSPSSQIPPSSSSSDNFFVDQLLNFSNEEDGFIEEEEEEEKPKHSISVSAPLQESDENSNHSSTNSSEDAFWSVSSGDFEDLEWLSHLVSDSSQEYSAAAAAAAPCSVFFPETTHQPLPKFGSNLKTQFPSKPRSKRAKVSGRVWSTSLITSSSSAKKPRKSSTPEGSGRVQPPRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPSFSSELHSNHHRKVLEMRRQKETEKHPSGPGPTLGVV 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16857778 16859403 + MC01g_new0408 Mch1g1560 676452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1560 285 Pfam GATA zinc finger 204 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 CDD ZnF_GATA 203 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 MobiDBLite consensus disorder prediction 147 207 - -
Mch1g1560 285 Gene3D - 195 274 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch1g1560 285 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 260 - -
Mch1g1560 285 MobiDBLite consensus disorder prediction 168 196 - -
Mch1g1560 285 ProSitePatterns GATA-type zinc finger domain. 204 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 MobiDBLite consensus disorder prediction 75 97 - -
Mch1g1560 285 ProSiteProfiles GATA-type zinc finger domain profile. 198 234 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch1g1560 285 FunFam GATA transcription factor 194 277 - -
Mch1g1560 285 MobiDBLite consensus disorder prediction 266 285 - -
Mch1g1560 285 PIRSF Txn_fac_GATA_plant 11 277 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch1g1560 285 MobiDBLite consensus disorder prediction 56 97 - -
Mch1g1560 285 PANTHER GATA TRANSCRIPTION FACTOR 43 270 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Mch1g1560 285 SMART GATA_3 198 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1560 Mch-Chr1:16857778 Mch9g0313 Mch-Chr9:2348359 5.40E-41 dispersed
Mch1g1560 Mch-Chr1:16857778 Mch10g0751 Mch-Chr10:5208041 3.87E-49 wgd
Mch1g1560 Mch-Chr1:16857778 Mch2g1067 Mch-Chr2:7179548 7.82E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42773 PF00320 GATA 1.40E-16 CL0167 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1560 - - - 0.0