Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch1g1563 | ATGGAGGATTATTCTGTTCTTCAACCTCTGCCTATGGCACTCTTTTTCGCGGCCTCTCTTTCGTTTCTGCTCGGCCTGATCTTCAGGTTCCGCCGGAGGTTGCCCTTCCCACCGGGCCCAAAAGGCCTGCCCTTCATCGGCAACATGCTGATGATGGACCAGCTCACCCACCGGGGGCTCGCCAAGCTCGCCCACCGCTACGGCGGAATCTTCCACATGCGCATGGGGTTCCTACATATGGTTGCTGTTTCCGACCCGGAGGTCGCCCGCCAAGTTCTTCAGGTGCACGACGGCATCTGTTCAAACCGTCCGGCCAGCATCGCCATAAGTTACCTGACGTACGATCGTGCCGACATGGCTTTCGCCCACTACGGCCCTTTCTGGCGACAGATGCGTAAGCTGTGCGTCATGAAGTTGTTCAGCCGTAAGCGAGCCGAGTCCTGGGAGTCCGTCCGGGACGAGGTCGACACCACCGTCACAAAAGTCACCCTCCACGCCGGAACCGCCGTGAACATCGGCGACTTAGTGTTTCAACTCACCCGAGATATTATATACAGAGCCGCATTTGGGACCACCACCATCCAGGGCCAGCACGAGTTCATAGCAATCATGCAGGAATTCTCAAGGCTCTTCGGAGCTTTCAATATCGCCGATTTTATCCCGGCTCTCGGTTGGATCGACCCTCAAGGCCTAAACAGCAGGCTGGTCAAAGCGCGTGGATCACTCGATCGGTTCATCGACACCATAATCGACCAACACTTCGCCAACAACAGCAACACGAGCGACAAACACCGCCGCCAAGTCGTTGACACCGACATGGTCGACGAGTTGCTTGCTTTTTACAGCGAAAGCGCTTCAGTAAATGACTCTGATGATCTACAAAAGGCCATCAAACTCAGCAGGGACAACATTAAAGCCATCATCATGGACGTTATGTTCGGGGGGACGGAGACGGTGGCGTCGGCAATAGAGTGGGCCATGTCGGAGCTGATGAGAAGTCCAGAAGATCTGAAGAGGGTCCAACAGGAACTGGCCCAAATCGTAGGTCTCGAACGACGTGTCGAGGAATCCGACTTGGAGAAGCTGACGTATCTAAAATGCTGCCTCAAGGAAACCCTCCGCCTCCACCCGCCGATCCCGCTGCTCCTCCACGAGACGGCGGAGGACGTGGAGGTCGCCGGCTATTTCATCCCGGCGAGATCCCGCGTCATGGTTAACGCGTGGGCCATCGGTCGGGACCCGGCCTCCTGGGACGAGCCCGAAACCTTCCGACCGGCGAGGTTTCTGGAACCGGGCGTCGCCGATTTCAAAGGGAGCAACTTCGAGTTCATTCCGTTCGGGTCGGGTCGGAGGTCCTGCCCCGGAATGCAACTGGGGCTGTACGCGCTGGAGATGGCGGTGGCCCACTTGCTCCACTGTTTCACTTGGGAATTGCCCGACGGAATGAAGCCCAGCGAAATGGATATGGGTGACGTATTCGGGCTCACCGCTCCGAGAGCGACCCGACTCGTCGCCGTGCCCACTAAGCGGGTTCTCTGCCCTCTCGTTTGA | 1551 | 57.64 | MEDYSVLQPLPMALFFAASLSFLLGLIFRFRRRLPFPPGPKGLPFIGNMLMMDQLTHRGLAKLAHRYGGIFHMRMGFLHMVAVSDPEVARQVLQVHDGICSNRPASIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVRDEVDTTVTKVTLHAGTAVNIGDLVFQLTRDIIYRAAFGTTTIQGQHEFIAIMQEFSRLFGAFNIADFIPALGWIDPQGLNSRLVKARGSLDRFIDTIIDQHFANNSNTSDKHRRQVVDTDMVDELLAFYSESASVNDSDDLQKAIKLSRDNIKAIIMDVMFGGTETVASAIEWAMSELMRSPEDLKRVQQELAQIVGLERRVEESDLEKLTYLKCCLKETLRLHPPIPLLLHETAEDVEVAGYFIPARSRVMVNAWAIGRDPASWDEPETFRPARFLEPGVADFKGSNFEFIPFGSGRRSCPGMQLGLYALEMAVAHLLHCFTWELPDGMKPSEMDMGDVFGLTAPRATRLVAVPTKRVLCPLV | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16881486 | 16885393 | + | MC01g_new0409 | Mch1g1563 | 676455 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch1g1563 | 516 | PANTHER | CYTOCHROME P450 84A1-RELATED | 11 | 515 | IPR053062 | GO:0004497(PANTHER) | |
| Mch1g1563 | 516 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Mch1g1563 | 516 | Coils | Coil | 340 | 360 | - | - | |
| Mch1g1563 | 516 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | E-class P450 group I signature | 406 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | E-class P450 group I signature | 303 | 320 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | E-class P450 group I signature | 323 | 349 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | E-class P450 group I signature | 366 | 384 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | CDD | CYP71-like | 66 | 503 | - | - | |
| Mch1g1563 | 516 | PRINTS | P450 superfamily signature | 314 | 331 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | P450 superfamily signature | 367 | 378 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | SUPERFAMILY | Cytochrome P450 | 29 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | FunFam | Cytochrome P450 84A1 | 29 | 509 | - | - | |
| Mch1g1563 | 516 | Pfam | Cytochrome P450 | 37 | 498 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch1g1563 | 516 | Gene3D | Cytochrome P450 | 29 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1563 | Mch-Chr1:16881486 | Mch4g0558 | Mch-Chr4:3540876 | 8.32E-239 | dispersed | |
| Mch1g1563 | Mch-Chr1:16881486 | Mch3g1399 | Mch-Chr3:16503374 | 3.03E-116 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch1g1563 | K09755 | - | csv:101205783 | 800.816 |