Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1566 ATGAGGATACTCTGTGACTCTTGCGAAAGCGCCGCCGCGACTTTGTTTTGTGCTGCCGATGAGGCTGCCCTTTGCGCAGAATGTGACACCAAGGTGCACATGTGCAATAAGCTAGCGAGTCGCCATGTGAGGGTTGGGCTAGCGAATCCGAGCGAAGTTTCTCACTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGGTAGATGGGAGTTCCCTTTGTTTACAGTGCGACATGATTGTTCATGTGGGAGGGAAAAGAATGCACAAGAGATATCTCCTGTTGAGGCAGGGAGTTGAGTTTCCAGGGGATAAAATGGATAATATCAAGGACCTAAATGCACAAGTGGTGGAACAGGATGAGACTGTGAGAGTCCAAAATGAACAGCCAGGTGAGAAGCAGCAAAACCTGAGGGTCTCAGGAGTAAAAGATTATTCAAATGGAGATGGCCGTTCTTCTTCTAAGAGGGGTAATAAAGTGATTGATTTGAATATCTAG 504 46.03 MRILCDSCESAAATLFCAADEAALCAECDTKVHMCNKLASRHVRVGLANPSEVSHCDICENAPAFFYCEVDGSSLCLQCDMIVHVGGKRMHKRYLLLRQGVEFPGDKMDNIKDLNAQVVEQDETVRVQNEQPGEKQQNLRVSGVKDYSNGDGRSSSKRGNKVIDLNI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16894983 16896848 - MC01g1156 Mch1g1566 676458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1566 167 Gene3D Classic Zinc Finger 1 94 - -
Mch1g1566 167 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 141 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch1g1566 167 FunFam B-box zinc finger protein 19 2 92 - -
Mch1g1566 167 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 MobiDBLite consensus disorder prediction 127 167 - -
Mch1g1566 167 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 Coils Coil 111 131 - -
Mch1g1566 167 CDD Bbox1_BBX-like 56 96 IPR049808 -
Mch1g1566 167 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1566 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0804 Mch-Chr10:5576670 Mch1g1566 Mch-Chr1:16894983 8.10E-67 dispersed
Mch1g1566 Mch-Chr1:16894983 Mch7g0133 Mch-Chr7:1637820 2.49E-21 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.0e-93 339.0
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 7.0e-90 327.8
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch4g0563 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.8 2.7e-53 206.1
Mch11g0147 . 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 52.2 1.3e-50 197.2
Mch10g1031 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.4 2.9e-76 282.3
Mch10g0804 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 2.3e-56 215.3
Mch1g1566 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 75.2 1.4e-48 189.5
Mch10g0804 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.5e-58 221.5
Mch1g1566 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 62.0 4.6e-50 194.5
Mch4g0563 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 50.4 2.9e-52 202.2
Mch8g0821 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 8.1e-47 184.1
Mch2g1076 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 4.3e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42775 PF00643 zf-B_box 2.50E-06 No_clan Mch TF