Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1566 ATGAGGATACTCTGTGACTCTTGCGAAAGCGCCGCCGCGACTTTGTTTTGTGCTGCCGATGAGGCTGCCCTTTGCGCAGAATGTGACACCAAGGTGCACATGTGCAATAAGCTAGCGAGTCGCCATGTGAGGGTTGGGCTAGCGAATCCGAGCGAAGTTTCTCACTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGGTAGATGGGAGTTCCCTTTGTTTACAGTGCGACATGATTGTTCATGTGGGAGGGAAAAGAATGCACAAGAGATATCTCCTGTTGAGGCAGGGAGTTGAGTTTCCAGGGGATAAAATGGATAATATCAAGGACCTAAATGCACAAGTGGTGGAACAGGATGAGACTGTGAGAGTCCAAAATGAACAGCCAGGTGAGAAGCAGCAAAACCTGAGGGTCTCAGGAGTAAAAGATTATTCAAATGGAGATGGCCGTTCTTCTTCTAAGAGGGGTAATAAAGTGATTGATTTGAATATCTAG 504 46.03 MRILCDSCESAAATLFCAADEAALCAECDTKVHMCNKLASRHVRVGLANPSEVSHCDICENAPAFFYCEVDGSSLCLQCDMIVHVGGKRMHKRYLLLRQGVEFPGDKMDNIKDLNAQVVEQDETVRVQNEQPGEKQQNLRVSGVKDYSNGDGRSSSKRGNKVIDLNI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16894983 16896848 - MC01g1156 Mch1g1566 676458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1566 167 Gene3D Classic Zinc Finger 1 94 - -
Mch1g1566 167 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 141 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch1g1566 167 FunFam B-box zinc finger protein 19 2 92 - -
Mch1g1566 167 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 MobiDBLite consensus disorder prediction 127 167 - -
Mch1g1566 167 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch1g1566 167 Coils Coil 111 131 - -
Mch1g1566 167 CDD Bbox1_BBX-like 56 96 IPR049808 -
Mch1g1566 167 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0804 Mch-Chr10:5576670 Mch1g1566 Mch-Chr1:16894983 8.10E-67 dispersed
Mch1g1566 Mch-Chr1:16894983 Mch7g0133 Mch-Chr7:1637820 2.49E-21 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42775 PF00643 zf-B_box 2.50E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1566 - - - 0.0