Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1586 CCTTTTGGGATCGTCATGGAGCAGTGGAAGACTGGAGATTTCTCCCAGTCTATTGTAGCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCTCCGCCTCAGCCTCTTTCAGTGCCCTCAAGTCGCCTCCCTAGCCAGCTTCCTGAATCCAGGTTAAGAACAGATGCGGAAGTAAAAGATCCAGTAGCTGTGAGAAAAATTCAGAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAACTAGGAAACACATTAGACCCAGACAGACCCAAAAATGACAAGGCCACTATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCTGAAGTCAATAGATTAAAGGCCGACCATGAAGCTCTTTCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATTGAAAATCTTAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCCGTCGTTATGGGGCCCCCGTATTCGTACCCGGTTCCTGTTCCTGTCCCTCCGGGACCTATTCCCATGCATCCATCATTGCAGCCTTTCACCTTCTTTGGAAATCAAAATCCTGGTGCCATTCCCAACCCATGTTCAACATTTGTACCATATACTGCTGCTCCCAATCATCCAATCGAACAACCCTCTGCCCAGTATGCATCCAATTCACATATTTCTAGCAAACAAGATTCCAGAAGTAAGTCATCAGATCAGCATAGGCGTAATAATGCAGAAAGATGTGACGAATCTAATGACGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCGTCCTCTGGGAGTAAGAAAGGTAAGCAGTCGCAGAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCGTCAAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGCGTTGGCGATGTCCCGAAACCGAACAACTGA 1023 44.97 PFGIVMEQWKTGDFSQSIVAADLVPSSSLQPPPQPLSVPSSRLPSQLPESRLRTDAEVKDPVAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADHEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAPNHPIEQPSAQYASNSHISSKQDSRSKSSDQHRRNNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQRKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDVPKPNN 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17040029 17043195 - MC01g1176 Mch1g1586 676478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1586 340 MobiDBLite consensus disorder prediction 228 340 - -
Mch1g1586 340 MobiDBLite consensus disorder prediction 312 340 - -
Mch1g1586 340 MobiDBLite consensus disorder prediction 282 297 - -
Mch1g1586 340 Coils Coil 104 159 - -
Mch1g1586 340 CDD bHLH_AtILR3_like 69 143 - -
Mch1g1586 340 PANTHER TRANSCRIPTION FACTOR BHLH121 30 338 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Mch1g1586 340 Gene3D - 63 166 IPR036638 GO:0046983(InterPro)
Mch1g1586 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 114 IPR011598 GO:0046983(InterPro)
Mch1g1586 340 MobiDBLite consensus disorder prediction 233 251 - -
Mch1g1586 340 MobiDBLite consensus disorder prediction 25 56 - -
Mch1g1586 340 MobiDBLite consensus disorder prediction 252 277 - -
Mch1g1586 340 SMART finulus 70 120 IPR011598 GO:0046983(InterPro)
Mch1g1586 340 Pfam Helix-loop-helix DNA-binding domain 65 115 IPR011598 GO:0046983(InterPro)
Mch1g1586 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 134 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1586 Mch-Chr1:17040029 Mch2g0619 Mch-Chr2:4246485 1.67E-08 dispersed
Mch1g1586 Mch-Chr1:17040029 Mch2g1024 Mch-Chr2:6942554 8.29E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42779 PF00010 HLH 6.60E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1586 - - - 0.0