Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1612 ATGGGCTTCCTTCCTGTGGTTGCGGTTCTTTTGCTGTCTGTTTTGTCTTTGGGGAGCTCGCTGAGCTTAGACTACTACGAGAAGACATGTCCTGGGGTTGACTTTATCGTGACTAAAGCTGTCAAGGATGCAGCTTACAAAGACAAGACTGTCCCTGCTGCACTCCTCCGGATGCACTTTCATGACTGCTTTATAAGGGGTTGTGATGCATCTGTACTGCTGAACTCAGTAGGGAACAACAAAGCAGAGAAAGATGGGCCACCAAACTTATCTTTGCATTCATTTTTCGTGATCGACAACGCAAAGAAAGAACTGGAATCCTATTGCCCCGGCGTTGTCTCCTGTGCTGATATCTTGGCTCTGGCTGCAAGGGATGCAGTTGTGCTTTCTGGAGGCCCAACATGGTATGTTCCTAAAGGGAGAAAGGATGGAAGGATATCAAAGGCTAGTGAAACAATACAATTGCCATCTCCAAGCTTCAACATTTCTCAGCTGCAACAGAGCTTCTCCCAAAGAGGTTTATCCCTTGACGACCTAGTCGCTCTTTCAGGAGGACACACCTTAGGATTTGCTCACTGCTCATCCTTCGAAGGTAGAATCCGCAACTTCAGTCCAGCCAGCAACGTTGACCCTGTAATGAATCCGTCCTTCGCAGCAAGCCTAAGAAATGTGTGCCCAGTAATCCACAAGGCGAAAAATGCTGGCTCAAACATGGATACATCTCCAACCACATTCGACAACACTTACTACAGACTGATACTCCAAAAGAAGGGCCTGTTTTCTTCTGACCAAGCTCTGCTCGACTTTCCCAAGACCAAAGATCTTGTTTATAAGTTCGCTAGCTCAAAGGAAGCCTTCAACAGAGCATTTGTTAATTCTATGATCAAAATGAGTAGCATCACTGGTGGTCAGGAAATCAGGAAGAATTGTAGGGCAGTGAACTAA 945 46.14 MGFLPVVAVLLLSVLSLGSSLSLDYYEKTCPGVDFIVTKAVKDAAYKDKTVPAALLRMHFHDCFIRGCDASVLLNSVGNNKAEKDGPPNLSLHSFFVIDNAKKELESYCPGVVSCADILALAARDAVVLSGGPTWYVPKGRKDGRISKASETIQLPSPSFNISQLQQSFSQRGLSLDDLVALSGGHTLGFAHCSSFEGRIRNFSPASNVDPVMNPSFAASLRNVCPVIHKAKNAGSNMDTSPTTFDNTYYRLILQKKGLFSSDQALLDFPKTKDLVYKFASSKEAFNRAFVNSMIKMSSITGGQEIRKNCRAVN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17200436 17202721 - MC01g1199 Mch1g1612 676504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1612 314 Pfam Peroxidase 37 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 Gene3D Peroxidase, domain 2 156 297 - -
Mch1g1612 314 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Mch1g1612 314 ProSiteProfiles Plant heme peroxidase family profile. 20 314 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PANTHER PEROXIDASE 25-RELATED 15 310 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Mch1g1612 314 FunFam Peroxidase 24 167 - -
Mch1g1612 314 FunFam Peroxidase 156 297 - -
Mch1g1612 314 CDD secretory_peroxidase 24 313 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Mch1g1612 314 SUPERFAMILY Heme-dependent peroxidases 21 314 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 Gene3D - 24 314 - -
Mch1g1612 314 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch1g1612 314 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0197 Mch-Chr10:1177379 Mch1g1612 Mch-Chr1:17200436 2.41E-115 dispersed
Mch11g0479 Mch-Chr11:3065920 Mch1g1612 Mch-Chr1:17200436 1.67E-73 dispersed
Mch1g0156 Mch-Chr1:3740253 Mch1g1612 Mch-Chr1:17200436 3.78E-90 dispersed
Mch1g1612 Mch-Chr1:17200436 Mch2g0628 Mch-Chr2:4291657 2.09E-87 dispersed
Mch8g0460 Mch-Chr8:3269752 Mch1g1612 Mch-Chr1:17200436 6.38E-13 dispersed
Mch1g1612 Mch-Chr1:17200436 Mch8g0870 Mch-Chr8:6209238 1.08E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1612 K00430 - csv:101217954 565.074