Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1618 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGCTGCCGTCCTCGGACAATATCGTACACAGCGGTTTGGATTCAGCAGGGGGCCGTCATGAAGGGCTGCTTTGGTACAAAGATATAGGACAACACGTGAATGGTGAATTTTCAATGGCTGTTGTCCAGGCCAACAACTTGCTAGAGGATCAGAGCCAGATCGAATCGGGTCCGTTGAGCTTGCTTGAATCCGGCCCATATGGAACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAGGCATCAAATTACGTATATGATAATCTTTTCCAGCATCTGAAAAGGTTCACCTCAGAGCAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAAGAAGGCTTTATTTCTCTAGTGACCAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTCGGTGTGATCTGCGATGGCACCCTTTACATAGCCAACCTTGGTGATTCCCGTGCTGTGCTGGGAAGGCTCGTGCGGGCGACTGACGAGGTTATTGCCGTTCAGTTATCAGCAGAGCATAATGTGAGCATAGAATCCGTCAGAAGTGAGATGCATTCTCTACACCCAGATGACTCCCACATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAAGGCTTAATACAGGTTTCCAGATCCATTGGTGACGCGTATCTAAAGAAGGCTGAATTCAACAGGGAACCATTGTATGCTAAGTTTAGGCTCCGCGAACCGTTCTCTCGGCCAATATTGAGCTGCGAACCATCAATTTCGGTGCATGAACTTCAACCACATGATCAGTTTATCATATTTGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAGCAGGCCGTGGATATCATTCAAAATAATCCGCATAATGGAAGTGCTAAGAGATTGGTGAAGACTGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAGGGAAATCGACCGTGGTGTCCGCCGCCATTTTCATGACGACATCACAGTCATAGTTGTGTTTCTTGACTCAAATCTCGTGAGCAGAGCGAGCTCAGTCCGAGGCCGTACTATGTCTTTGAGAGGGAGGGGGGTTATCCTACCTACAAAATCTCTAGCCCCTTGTGCCACACCTGCAGAAACTTAA 1188 46.8 MLSSLMNFLRACWLPSSDNIVHSGLDSAGGRHEGLLWYKDIGQHVNGEFSMAVVQANNLLEDQSQIESGPLSLLESGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICDGTLYIANLGDSRAVLGRLVRATDEVIAVQLSAEHNVSIESVRSEMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLYAKFRLREPFSRPILSCEPSISVHELQPHDQFIIFASDGLWEHISNQQAVDIIQNNPHNGSAKRLVKTAMQEAAKKREMRYSDLREIDRGVRRHFHDDITVIVVFLDSNLVSRASSVRGRTMSLRGRGVILPTKSLAPCATPAET 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17234809 17238406 + MC01g1205 Mch1g1618 676510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1618 395 SMART PP2C_4 42 354 IPR001932 -
Mch1g1618 395 Gene3D - 38 366 IPR036457 -
Mch1g1618 395 PANTHER PROTEIN PHOSPHATASE 42 355 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch1g1618 395 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169(InterPro)
Mch1g1618 395 FunFam Phosphatase 2C family protein 37 366 - -
Mch1g1618 395 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
Mch1g1618 395 SUPERFAMILY PP2C-like 57 357 IPR036457 -
Mch1g1618 395 Pfam Protein phosphatase 2C 81 324 IPR001932 -
Mch1g1618 395 CDD PP2Cc 49 356 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1618 Mch-Chr1:17234809 Mch4g0471 Mch-Chr4:3011548 1.19E-207 dispersed
Mch7g1243 Mch-Chr7:15956850 Mch1g1618 Mch-Chr1:17234809 6.15E-145 transposed
Mch1g1618 Mch-Chr1:17234809 Mch10g1790 Mch-Chr10:17651719 3.08E-216 wgd
Mch1g1618 Mch-Chr1:17234809 Mch2g0384 Mch-Chr2:2843424 2.43E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1618 K01102 - csv:101219696 719.924