Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1623 ATGGAAGAGAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCGAGGCCACCCGTTTGCCTAACATGGACGTTGTATCTTCGCGTATGCGCCGTTGCTTCACGGTCTGTGGTGCTATCGATTACACTGCCACTAAATCCGTCCGAACCAAGTCGGGGGACGCCGCTGGCGCGGAGGAAGTCCACCGCAGCCATGGAAAGATCATCACCAGTGACCCGTATGTCACCGTCACCGTCCCACAACAAACCGTTGCTCGGACTCGCGTCATAAAGAATTCCCAGAGTCCCATTTGGAATGAGCATTTCGTTATCCCCCTTGCACAGAAGATGGCCTTCTTGGAATTCAACGTGAAAGACGACGACGTCTTTGGCGCTGAAGTTATGGGGACGGTCAAATTCCCTGCTCAGAAAATCGCCTCCGGTGCACTCATTAGCGGGTGGTTTCAGGTGCTTGGCCCAAATGATAAGCCGCCGAAGGCTGGCGCTTCGCTACGACTCGAAATGAAGTTCTCTCCGGTTGAGAATAACCCATTATATCGGCACGGCATTGCTGGAGATCCGGAGCAAAAGGGCGTGCGGCACACTTATTTTCCCGTTAGGAAAGGGAGCTCCATGAGACTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCGGAGATTGGATTAGACGGAGGGAAAGTTTATAGGCAAGAGAAATGCTGGGAAGATATCTGCCATGCTATATCAGAGGCTCACCATATGATTTATGTCGTCGGATGGTCGGTTTTTCATAAGGTGAAGCTGATTAGAGAGCCAAGCAGGCCATTGCCGCGAGGTGGGGATTTGACTCTTGGTGATCTGCTCAAATACAAATCAGAAGAGGGGGTCCGAGTTTTGATGATGGTTTGGGATGATAAGACTTCTCACGATAAGTTATTCATTAACACGGCAGGATTGATGCAGACACATGATGAGGAAACTCGAAAATTTTTCAAGCATTCATCAGTTATCTGCGTGCTCTCACCTCGCTATCCAAGTGGCAAGTTAAGCTATGTGAAACAGAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAAGGATATGGTAATAACAGAAAGATAACTGCATTTATTGGAGGTCTTGATCTCTGTGATGGTCGCTACGATACACCTGAGCATCGATTGTTCCTTGGCCTTGACACGATATTTAAGGATGATTTTCATAATCCTACATTTCCTGCTGGAACCAAAGCTCCACGGCAACCATGGCATGACTTGCACTGTCGAATCGAAGGGCCGGCTGCATATGACTTGCTTATGAACTTTGAGCAACGTTGGAACAAAGCCACAAGATGGACAGAGTTTGGCTTACGGTGCAGGAGAATTTCTCACTGGCATGATGCTTTGATAAAGATAGAGCGGATATCATGGATATTAAGCCCTAACCTAACTACCTTAAGAGACGGTACGATAAAAGTTCCAGAGGATGACCCTAAAGTATTTGTTTCAAGGGAAGAAGATCCTGAAAACTGGCATGTTCAGATTTTCCGTTCCATTGACTCTGGGTCTGTTAAAGGATTTCCAAAAGATGTCCATGTTGCCGAGTCTCAGAACCTTGTCTGTGCAAAAAACTTGACTATAGAGAAAAGCATTGAAATGGCATATATCCAGGCCATCAGATCCGCGCAACATTTCATATATATTGAAAATCAGTATTTTATTGGATCATCGTACGGATGGCCGGGATATAAAAATGCTGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTAAAGATTGCAAGCAAAATAAGAGCTAAGGAAAGATTTGTTGTATATATTATCATACCAATGTGGCCGGAGGGAGATCCGAAGAGCGGTCCCATGCAAGAGATCCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGAAATTGTTGCAAGTGAATTGAAGTCATCACAGCAACCAGATTTGCGCCCTCAAGACTACCTAAATTTCTACTGCCTTGGTAATCGGGAAGAAATTCCTAACAATGGGCAGACAACCGACGATACAACGGGATCTATATCTAGTGCACAAAAACATCAACGGTTTATGATATATGTACATGCCAAGGGGATGGTAGTAGATGATGAATATGTAATTATTGGGTCTGCCAATATTAACCAAAGATCTATGGCGGGAACCAAGGACACCGAGATAGCCACTGGTGCATATCAGCCACATCACACGTGGGCAAAGAATAAGAAACACCCTCGGGGTCAGATTTACGGGTACAGAATGTCGCTATGGAGTGAGCATCTCGGGTTGCTTGATCCATGTTTTGAGGAGCCAGAAAGTTTGGAATGCGTGAGAAGAGTGAACAGGATTGCGGAGGATAACTGGACGAGGTTCACGGATGAGGAGTTCACGACGTTGCAGGGCCACCTTCTCCAGTATCCGTTGCTCGTGGAAGGTGACGGGAAAGTCAGCCCTCTGCCTGGACATGAAAACTTCCCTGATATAGGGGGGAAGATACTAGGGTCTCATTCCACTGCAATTCCTGATGTTTTGACCACATAG 2580 46.43 MEESSEEVYLHGDLDLKIFEATRLPNMDVVSSRMRRCFTVCGAIDYTATKSVRTKSGDAAGAEEVHRSHGKIITSDPYVTVTVPQQTVARTRVIKNSQSPIWNEHFVIPLAQKMAFLEFNVKDDDVFGAEVMGTVKFPAQKIASGALISGWFQVLGPNDKPPKAGASLRLEMKFSPVENNPLYRHGIAGDPEQKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPEIGLDGGKVYRQEKCWEDICHAISEAHHMIYVVGWSVFHKVKLIREPSRPLPRGGDLTLGDLLKYKSEEGVRVLMMVWDDKTSHDKLFINTAGLMQTHDEETRKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFIGGLDLCDGRYDTPEHRLFLGLDTIFKDDFHNPTFPAGTKAPRQPWHDLHCRIEGPAAYDLLMNFEQRWNKATRWTEFGLRCRRISHWHDALIKIERISWILSPNLTTLRDGTIKVPEDDPKVFVSREEDPENWHVQIFRSIDSGSVKGFPKDVHVAESQNLVCAKNLTIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRAKERFVVYIIIPMWPEGDPKSGPMQEILYWQGQTMQMMYEIVASELKSSQQPDLRPQDYLNFYCLGNREEIPNNGQTTDDTTGSISSAQKHQRFMIYVHAKGMVVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKNKKHPRGQIYGYRMSLWSEHLGLLDPCFEEPESLECVRRVNRIAEDNWTRFTDEEFTTLQGHLLQYPLLVEGDGKVSPLPGHENFPDIGGKILGSHSTAIPDVLTT 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17265009 17272018 + MC01g1210 Mch1g1623 676515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1623 859 PIRSF PLD_plant 1 859 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Mch1g1623 859 FunFam Phospholipase D delta 229 472 - -
Mch1g1623 859 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 177 IPR035892 -
Mch1g1623 859 Pfam Phospholipase D Active site motif 706 731 IPR001736 GO:0003824(InterPro)
Mch1g1623 859 SMART C2_3c 13 151 IPR000008 -
Mch1g1623 859 Pfam C2 domain 74 153 IPR000008 -
Mch1g1623 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 704 731 IPR001736 GO:0003824(InterPro)
Mch1g1623 859 Gene3D C2 domain 11 183 IPR035892 -
Mch1g1623 859 Gene3D Endonuclease Chain A 229 465 - -
Mch1g1623 859 Pfam Phospholipase D C terminal 779 848 IPR024632 -
Mch1g1623 859 SUPERFAMILY Phospholipase D/nuclease 553 789 - -
Mch1g1623 859 SMART pld_4 704 731 IPR001736 GO:0003824(InterPro)
Mch1g1623 859 SMART pld_4 357 392 IPR001736 GO:0003824(InterPro)
Mch1g1623 859 Gene3D Endonuclease Chain A 526 755 - -
Mch1g1623 859 PANTHER PHOSPHOLIPASE D 9 846 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Mch1g1623 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824(InterPro)
Mch1g1623 859 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Mch1g1623 859 CDD C2_plant_PLD 8 174 - -
Mch1g1623 859 SUPERFAMILY Phospholipase D/nuclease 205 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1623 Mch-Chr1:17265009 Mch8g0878 Mch-Chr8:6261288 0 dispersed
Mch1g1623 Mch-Chr1:17265009 Mch7g0737 Mch-Chr7:11966031 2.57e-315 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1623 K01115 - csv:101217251 1543.87