Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1625 GACCAATCAATTCCGTACTGGAACAACAAGGCCGACAATGCGTGGCAGCTCACGGCGGCTACCATGGTCGGCCTCCAAACTGTTCCGGGCCTGGTCATCCTCTACGGCAGCATGGTGAAGAAGAAATGGGCTGTAAACTCTGCCTTCATGGCCCTCTATGGCTTTGCAGCCGTGCTCGTCTGTTGGGTACTTTGGGCACATCGTATGGCATTCGGCGACAGGCTGTTCTGGCTCGTTGGTAAGCCTGGTGCGGCGCTGTCTGAAAGGTACCTTCTTTCACAGTCTCCACAAGGGTGTTTTCCGATGGCTGACTACGTGTTTTTCCAGTTTGCTTTCGCCGCCATTACCGTGGTGTTGCTCGCCGGGTCTTTGCTGGGGAGGATGAACTTTTATGCATGGATGCTATTTGTTCCAATGTGGCTAACTCTTTGTTACACAGTTGGGGCCTTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGACTATGCCGGCGGCTATGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCTTACTGGGTAAACGACCTACAAAACAAGTTTTTACCTTCTATTTCCAGTGATCTTCCTTCTCCATATTTTGGAATCAAGTTGTTATTTGTGACAATGGTTTCTGATCCGTTGTGCCCGCAGGTTGGGCCACGACACTCCCAGGACAGGCAGAACTTCCCACCAAACAACATACTGCACATGGTGGGCGGTGCGGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCGTTTGCAGCGAGTCGGATAACATCACTTGCCATTTTAAACACACATATCTGCACCGCAACGAGTCTCTTGATCTGGGTCTCGATGGACATCATTGTATACAAGAAAAGCTCTGTGATCGGCGCAGTTCAAGGGATCATCACTGGCCTCGTGTGCATCACTCCTGGTGCAGGGCTTGTTGATCCCGTGGCGGCTGTGGTGATGGGCGTATTGGCTGGTTTGGTGCCATGGTACACTATGATGGTGCTGCACAGGAGGCTGGCATTCCTTCAGTGTGTTGATGATACCCTGGGCGTCTTCCACACGCACGCAGTGGCAGGTTGTATGGGGGGTCTCCTTACAGGTCTCTTTGCCAAACCCAACCTCCTGAGAATGATGTATACAGATACCATATACGGTCCCGGCCTTCTGTACGCCATCTCTGATAGAAATCTCAAAGATGGTCTCAAACAAATCGGCATCCAGTTTGCTGGAGCAGTGTTTATTACCCTTTGGAATGCCGTCTTCACCAGCATTATCTGTTACCTGGTTAGCCTAATTGTTAACTTAAGGATGAAAGAAGAGGACCTGGAGATTGGCGACGATGCTGCTCATGGAGAAGAACCCTACGCTTTGTGGGGCGATGGAGAGAAGATGCCATCCTCATTTCGTCTTCCACACACGCCCAGATTACCTTCATTTTGCAGGTGGGAT 1476 50.61 DQSIPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHRMAFGDRLFWLVGKPGAALSERYLLSQSPQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMLFVPMWLTLCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVNDLQNKFLPSISSDLPSPYFGIKLLFVTMVSDPLCPQVGPRHSQDRQNFPPNNILHMVGGAGFLWLGWTGFNGGAPFAASRITSLAILNTHICTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDPVAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGCMGGLLTGLFAKPNLLRMMYTDTIYGPGLLYAISDRNLKDGLKQIGIQFAGAVFITLWNAVFTSIICYLVSLIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRLPSFCRWD 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17280939 17282522 - MC01g1212 Mch1g1625 676517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1625 492 Gene3D Ammonium transporter AmtB like domains 1 467 IPR029020 -
Mch1g1625 492 SUPERFAMILY Ammonium transporter 7 213 - -
Mch1g1625 492 Pfam Ammonium Transporter Family 14 193 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch1g1625 492 Pfam Ammonium Transporter Family 224 464 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch1g1625 492 SUPERFAMILY Ammonium transporter 223 446 - -
Mch1g1625 492 PANTHER AMMONIUM TRANSPORTER MEP2 7 474 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1625 Mch-Chr1:17280939 Mch8g0424 Mch-Chr8:3030971 9.19E-194 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1625 K03320 - csv:101218977 858.596