Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1647 ATGGCGTTTTCCGATGAGAACAATCCGAACTTGATCAAACCCACCTCTGGGTTTCTTCCAGGAGGAGGGCTGGAGAAGAAGAGTAGTGGGAGGGCGTTTGGGCAAGAGATTCGTGGAATTAATAACAATCGGAGGGCTCTTAATGACATTAATCACAATTCTATGGTGAATCAAGCTTACCCTGTTGTTAACAAGAGAGTCCTCGCCGGAAAGCAAGAGATCTGTGAGAAGAAGCAGGTTGATCCATTTCACAGACCAATTACAAGGAAGTTTGCTGCTCAAATTGCGAGTAGCCAACAGCTTCATCATCCCCAGGAAAATAGTAAGGGTAACTCATTGCTCACAAACTCAAATGCGTTTGGACAATCCATATTTGTAGACGAGGAATGCAAGACAGCAGAAAACGACAGCCCAGTTCCCATGTTCTTGGAGAAAACAGAATCACCATTGCCTCAGGAACCAAGCCAGATGGAGGAAGTCGAAATGGAAGATATTGCAGAAGACGACTGCGACAACCCGGTAATTGACATCGATGGTGTCGATTCCAAGAACCCGCTTGCGGTTGTCGACTATGTGGACGATCTCTACGCACACTACAGAAAAATAGAGAATTCGAGCTGTGTTTCCCCAAATTATATGGCGCAGCAATTTGACATTAACGAGAGGATGAGGGCTATACTTATTGACTGGCTTATAGAGGTGCACGACAAGTTTGATCTCATGGGAGAGACATTGTTTCTCACCGTGAATCTCATAGACAGATTTTTGTCTCGAAAAACAGTTGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTCTTGGCTTGCAAATATGAGGAGGTTTCTGTTCCAATTGTGGGGGATTTGATTCTTATTTCTGATAAAGCCTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAACTGTCTGCAGTTTAACATGTCGGTCCCGACGCCGTTCGTTTTCCTCCAAAGGTTCCTAAAGGCTGCTCAGTCAGACAAAAAGCTCGAGCTTATGGCATTCTTCTTGATCGAGCTCTCGCTCGTGGAGTATGAAATGCTGAGATTTCCACCCTCTCTACTAGCGGCAGCGGCGACTTACACAGCTCAATGTACTCTCACCGGAGTCGAGGGGTGGAGCGTGACTTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCGAGGCTGATGGTGGGGCTCCATCAGAAGGCGGCGACGGGGAAGCTCACCGGGGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCGAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1344 46.21 MAFSDENNPNLIKPTSGFLPGGGLEKKSSGRAFGQEIRGINNNRRALNDINHNSMVNQAYPVVNKRVLAGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHPQENSKGNSLLTNSNAFGQSIFVDEECKTAENDSPVPMFLEKTESPLPQEPSQMEEVEMEDIAEDDCDNPVIDIDGVDSKNPLAVVDYVDDLYAHYRKIENSSCVSPNYMAQQFDINERMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSRKTVVRKKLQLVGLVSMLLACKYEEVSVPIVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTLTGVEGWSVTCEWHSSYSEDQLLECSRLMVGLHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17393279 17396126 - MC01g1232 Mch1g1647 676539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1647 447 SMART Cyclin_C_2 322 439 IPR004367 -
Mch1g1647 447 SMART cyclin_7 229 313 IPR013763 -
Mch1g1647 447 SMART cyclin_7 326 408 IPR013763 -
Mch1g1647 447 ProSitePatterns Cyclins signature. 224 255 IPR048258 -
Mch1g1647 447 Gene3D - 194 434 - -
Mch1g1647 447 CDD CYCLIN_AtCycB-like_rpt1 173 317 - -
Mch1g1647 447 SUPERFAMILY Cyclin-like 321 439 IPR036915 -
Mch1g1647 447 SUPERFAMILY Cyclin-like 183 319 IPR036915 -
Mch1g1647 447 MobiDBLite consensus disorder prediction 95 114 - -
Mch1g1647 447 MobiDBLite consensus disorder prediction 1 29 - -
Mch1g1647 447 FunFam G2/mitotic-specific cyclin 208 315 - -
Mch1g1647 447 Pfam Cyclin, N-terminal domain 194 320 IPR006671 -
Mch1g1647 447 Pfam Cyclin, C-terminal domain 322 438 IPR004367 -
Mch1g1647 447 PANTHER CYCLINS 163 426 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch1g1647 447 PIRSF Cyclin_A_B_D_E 23 447 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Mch1g1647 447 Gene3D - 208 320 - -
Mch1g1647 447 FunFam G2/mitotic-specific cyclin-1 316 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1647 Mch-Chr1:17393279 Mch4g0020 Mch-Chr4:140663 2.68E-66 dispersed
Mch2g0203 Mch-Chr2:1533033 Mch1g1647 Mch-Chr1:17393279 3.97E-80 transposed
Mch1g1647 Mch-Chr1:17393279 Mch11g0059 Mch-Chr11:387350 4.27E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1647 K21777 - csv:101216622 765.377