Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g1650 CTCAACAATGGCAAATTTCATCAACCAAGAAATTTGCCTCTACTTGAGCAGGACCTTAACTTCCTTCCTTGTTCAGCTGCTGCATCTGAAGGATCTGAGAATCAAATGAAAGAATCCTATGAACCAGGTGGGGAATTGCTGGTAATTGCAGAAAAGAAAAAAAGGGCAACAAGTGAGCACATTGCTGGAATTACTTTATCAGATCTGGCTAAATACTTCGATCTTCCAATTACAGAAGCTTCAAGAAACCTGAATGTTGGGTTGACAGTACTGAAAAGGAAATGCAGAGAATTCGGGATTCATCGCTGGCCACACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGATCACAAAGCTTTGATGGCAGTAACAAAGAGGCAAAGGATGTTGCAGAGTGAAAGAGAGAGCATAGAGATGACACCATTCAGAGAGCTAGAGACTGAGACCAGGAGATTTAGGCAAGATGTTTTCAGGAGAAGACATAAAGCTAGAGCTCTAGAAAGTCAGGGCACATCAGTT 555 42.16 LNNGKFHQPRNLPLLEQDLNFLPCSAAASEGSENQMKESYEPGGELLVIAEKKKRATSEHIAGITLSDLAKYFDLPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQRMLQSERESIEMTPFRELETETRRFRQDVFRRRHKARALESQGTSV 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17412133 17412881 - MC01g1235 Mch1g1650 676542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g1650 185 ProSiteProfiles RWP-RK domain profile. 46 131 IPR003035 -
Mch1g1650 185 PANTHER PROTEIN RKD4 8 183 IPR044607 GO:0003700(InterPro)
Mch1g1650 185 Pfam RWP-RK domain 64 111 IPR003035 -
Mch1g1650 185 Coils Coil 115 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g1650 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1650 Mch-Chr1:17412133 Mch6g0234 Mch-Chr6:1562023 1.38E-19 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0234 . 105 240 AtRKD Transcription Factor Family AT1G18790 68.4 1.8e-42 169.9
Mch1g1650 . 3 175 AtRKD Transcription Factor Family AT4G35590 50.3 2.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013768 0 4 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 2 0 1 1 1 1 1 0 1 1 1 0 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42781 PF02042 RWP-RK 5.90E-23 No_clan Mch TF